Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C10
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    27   0.23 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    26   0.53 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.93 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 778 WAVCPNPPFSPTAAP 822
           W V P+PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 478 SHVLSCVIPLILWITVLPPLSELIPLAA 395
           S +LS V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 827  G*GAAVGLNG--GFGHTAQLGANDLHPN 750
            G G+  GL G  G G  A+  A  LHPN
Sbjct: 1706 GGGSLAGLGGLGGLGGAAEASAAGLHPN 1733


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 827  G*GAAVGLNG--GFGHTAQLGANDLHPN 750
            G G+  GL G  G G  A+  A  LHPN
Sbjct: 1702 GGGSLAGLGGLGGLGGAAEASAAGLHPN 1729


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 499 GLLLAFCSHVL-SCVIPLILWITVLPPLSELIPL 401
           G  ++ CS +L S  +  +L   ++PP S  IPL
Sbjct: 278 GEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPL 311


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 615 DTRRFPLEAPSCALLFRPCR 674
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 721 KRHASRREKGGQVSGKRQGRNRRAH 647
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 478 SHVLSCVIPLILWITVLPPLSELIPL 401
           S +LS  +  +L   ++PP S ++PL
Sbjct: 277 SILLSLTVFFLLLAEIIPPTSLVVPL 302


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/52 (21%), Positives = 23/52 (44%)
 Frame = -2

Query: 272 LNLKHKMNAIVVVNLFIAAYNGYK*SNSITNFTNKAFFSLHSSCGLSKHHQC 117
           +N   + + ++VVN+  +     K + S  +  N+     H+S   S+   C
Sbjct: 186 INKIEEQDTVLVVNIEKSGKESKKYATSSNSLRNRTHGFQHTSSRYSRERSC 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,188
Number of Sequences: 438
Number of extensions: 5607
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)