Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_C04
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.54 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.94 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.6  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 27/111 (24%), Positives = 29/111 (26%), Gaps = 3/111 (2%)
 Frame = +1

Query: 586  PPPXGXXXXP-PXXGXPPKKXFXQXGPXXXPXQXXXPXXFFFXXPPPPXKKXXKX-LXXS 759
            P P G    P P    PP        P   P     P       PP P        +   
Sbjct: 1115 PAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAP 1174

Query: 760  XGGXPP-PPAXLXXXXXPPPXRPPPXAXPXXPXXXXXKXXTSPXXPXGGRG 909
              G PP P         PPP   PP   P           T+P  P    G
Sbjct: 1175 SSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAG 1225


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 763 GGXPPPPAXLXXXXXPPPXRPPPXA 837
           G  PPPP        PPP  PPP A
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPA 784



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +1

Query: 715 PPPPXKKXXKXLXXSXGGXPPPPAXLXXXXXPPPXRPPPXAXPXXP 852
           PPPP                PPPA +     PPP  PPP      P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP--PPPGVAGAGP 775


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/44 (31%), Positives = 17/44 (38%)
 Frame = +1

Query: 772  PPPPAXLXXXXXPPPXRPPPXAXPXXPXXXXXKXXTSPXXPXGG 903
            PPPP  +     PPP  PP  A P           ++P  P  G
Sbjct: 1708 PPPPMSVP----PPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/65 (30%), Positives = 20/65 (30%)
 Frame = -3

Query: 781 GGGGXPPXXGXXFXXFFFXGGGAXXKKXXXGXXXGXGPXXGPXXKXFFXGXPPXLGGXXX 602
           GG G PP     F  F   GG         G   G GP         F G P   GG   
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGG--FGGGPGGFEGGPGGFGGGPGGFGGGLG 252

Query: 601 PPXGG 587
              GG
Sbjct: 253 GFGGG 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,441
Number of Sequences: 5004
Number of extensions: 16470
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)