Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_B23
         (911 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.056
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.056
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 786 PPPPPGXGXFXXGPPXPXPP 845
           PPPPP  G    GPP P PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781



 Score = 30.7 bits (66), Expect = 0.30
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 786 PPPPPGXGXFXXGPPXPXPP 845
           PPPPPG       PP P PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 786 PPPPPGXGXFXXGPPXPXPP 845
           PPPPP  G      P P PP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.2 bits (55), Expect = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 786 PPPPPGXGXFXXGPPXPXP 842
           PPPPPG       PP P P
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,122
Number of Sequences: 5004
Number of extensions: 50843
Number of successful extensions: 200
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)