Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_B16
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    27   3.6  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   4.8  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   6.3  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 786 EARNQIXFR-QVKXKCSERKPSIHSKVKNLFGYNSYTC 676
           E +NQI +R Q         P I S+ KNL G N Y C
Sbjct: 37  EEKNQIPYRFQSVPDDVPEVPHIESRYKNLPGNNIYLC 74


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 161 PQDIRARANXXXXXXRPVIKFFAGDETLEIPDKSVAGIDKPLSRVDRSELELDSFAESL 337
           PQ +  +        +P +K   GD  + IP +S  G+  P   VDRS  E   + +++
Sbjct: 30  PQSLEQKGPSEMLSMKPDVKGGFGDRMMFIPFQSDLGLHSP---VDRSGFEYCGYLDAI 85


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 762 RQVKXKCSERKPSIHSKVKNLFGYNSYTCECFKNSNPCTHTKIFP*ASTLSK-FPYNVSN 586
           R+ + KC ERKP  ++ +K+      YT    + S   T ++  P +S LS+  P+ ++ 
Sbjct: 50  RKRRIKCDERKPICYNCIKSKRQCEGYT-HFPRPSGTFTASRRIPVSSLLSEPAPHGLAG 108

Query: 585 Q 583
           Q
Sbjct: 109 Q 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,423,315
Number of Sequences: 5004
Number of extensions: 70857
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)