Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_B09
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   292   4e-80
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   2.7  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  292 bits (717), Expect = 4e-80
 Identities = 147/245 (60%), Positives = 176/245 (71%)
 Frame = +3

Query: 105 ALLSVSDKTGLLSLAKSLSECGLQLIASGGTATALRNAGLTVQDVSDITRAPEMLGGRVK 284
           ALLSV DKTGLL LAK+L+  G++L+ SGGTA  +R +G+ V DVS IT APE+LGGRVK
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 285 TLHPAVHAGILARLSDSDQEDMKRQKYEMISVVVCNLYPFVQTVSKPDVTVADAVENIDI 464
           TLHPAVH GILAR   SD++D+  Q  E I +VVCNLYPF +T++KP+VT+ +AVE IDI
Sbjct: 63  TLHPAVHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEEIDI 122

Query: 465 GGVTLLRAAAKNHDRVTVVCDPADYDVVVKEIKENKHHQTSLGTRQRLALKAFTHTSDYD 644
           GGVTLLRAAAKNH RVT++ DPADY     +   +K  Q     R   ALKAF  T+ YD
Sbjct: 123 GGVTLLRAAAKNHARVTILSDPADYATFTDKFLSDKLTQDD---RNTYALKAFASTASYD 179

Query: 645 LAISDYFRKQYSPGQAQLTLRYGMNPHQKPAQVFTTRDSLPITTLNGAPGXYQXXCDALN 824
            AI+DYFRKQY+ G  QLTLRYG NPHQ PAQ F  +  LP   L G+PG Y    DALN
Sbjct: 180 AAITDYFRKQYAAGVDQLTLRYGANPHQSPAQAFMEQGPLPFKVLCGSPG-YINLMDALN 238

Query: 825 AWQLV 839
           +W LV
Sbjct: 239 SWPLV 243


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 475 VTPPMSMFSTASATVTS-GLDTVWTNGYRLQTT 380
           V PP+S F +AS  V   G   +W NGYR   T
Sbjct: 155 VRPPLSSFQSASDIVRRYGFTALW-NGYRYHLT 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,990
Number of Sequences: 5004
Number of extensions: 60847
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)