Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_B03
(880 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 35 0.018
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 34 0.031
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 34 0.031
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce... 34 0.031
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 32 0.12
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.22
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.38
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.38
SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 30 0.50
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.87
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 29 0.87
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.87
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz... 29 1.2
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 28 1.5
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 2.0
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb... 27 2.7
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 2.7
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 4.7
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 26 6.1
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 26 6.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 6.1
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 26 6.1
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 8.1
SPAC23H4.11c |cnl2||centromere localized protein Cnl2|Schizosacc... 26 8.1
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 26 8.1
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 26 8.1
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 34.7 bits (76), Expect = 0.018
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +2
Query: 206 IEHHTKEFHKTLQQQFNSLTKSKDAQDF---SKAWKDGSESVLQQLNAFAKSLQGALGDA 376
I+ K L+Q+ +L ++++A++ ++ + D S S +L A AK A DA
Sbjct: 98 IQPDEKTLQDLLEQRQVALREAREAEEELQRARQYNDRSTSEALELEARAKK---AAQDA 154
Query: 377 NGKAKEALEQSRQNIERTAEELRK-AHPDVEKNATALRE 490
A E +++ +IER+A K A + E+ ATALRE
Sbjct: 155 E-LASERAREAQSSIERSASLREKQAREEAERAATALRE 192
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.9 bits (74), Expect = 0.031
Identities = 32/125 (25%), Positives = 57/125 (45%)
Frame = +2
Query: 281 QDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPD 460
++++ WK +SVL N + + L + K EALE+ +Q +E +E K
Sbjct: 1329 KEYNSRWKLRFQSVL---NKYERVDPTQLEELK-KNCEALEKEKQELETKLQETAKETDT 1384
Query: 461 VEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVI 640
++ +L E+ V+N +E ++ K + NEK K++ FA QE+
Sbjct: 1385 FKQQVNSLNEE----VENLKKEVEQANTKNTRLAAAWNEKCENLKKSSLTRFAHLKQELT 1440
Query: 641 KKIQE 655
K +E
Sbjct: 1441 NKNKE 1445
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 33.9 bits (74), Expect = 0.031
Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 9/165 (5%)
Frame = +2
Query: 230 HKTLQQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANG---KAKEAL 400
H+T+ +Q + +A + ES L N ++ L ++N K +E +
Sbjct: 625 HQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLLKLEESNKSLIKKQEDV 684
Query: 401 EQSRQNIERTAEELRKAHPDV---EKNATALREKLQ--AAVQNTVQESQKLAKKVSSNVQ 565
+ +NI+ E+LRK+ + + A LRE + T++ + S+ +
Sbjct: 685 DSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAK 744
Query: 566 ETNEKLAPKIKAAYDDFAKNTQEVIKKIQEAANAKQ-*ASILNSH 697
TN L+ ++ + +D + T V Q++ KQ S++NS+
Sbjct: 745 NTNAILSSELTKSSEDVKRLTANVETLTQDSKAMKQSFTSLVNSY 789
>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 238
Score = 33.9 bits (74), Expect = 0.031
Identities = 27/107 (25%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Frame = +2
Query: 236 TLQQQFNSLTKSKDAQD---FSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQ 406
T++ ++SL KSK + F + ++ + +L N + + L + +A KA+++LEQ
Sbjct: 8 TIELDYDSL-KSKISNFNSIFDRFLQEERKKLLNNKNEYLRQLS-EINEAQKKAEKSLEQ 65
Query: 407 SRQNIERTAEELRKAHPD---VEKNATALREKLQAAVQNTVQESQKL 538
+ + E L K H + E+ + +EKL A ++ + S++L
Sbjct: 66 TEARKQNFTELLEKEHEEQAITEQEIFSFQEKLDAMLKRKQKLSEEL 112
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 31.9 bits (69), Expect = 0.12
Identities = 36/161 (22%), Positives = 63/161 (39%), Gaps = 3/161 (1%)
Frame = +2
Query: 176 RRDAPDFFKDIEHHTKEFHKTLQQQFNSLT---KSKDAQDFSKAWKDGSESVLQQLNAFA 346
++ DFFK + ++ H TL+++ NSL+ +K + G + +LN
Sbjct: 56 KKSEQDFFKMLSSRDRDAHSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLL 115
Query: 347 KSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 526
+ LQG + A S + E V +N + R+ L V ++Q
Sbjct: 116 R-LQGRMNSAR------TNTSMNPYSCDSNENLSTLSSVNQNFNS-RQLLATIVPESIQN 167
Query: 527 SQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQEVIKKI 649
L + V++ L P + Y KNT + KK+
Sbjct: 168 GCSLLRITKKKVRQRKVSLDP--ISGYLMLDKNTGKAYKKL 206
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 31.1 bits (67), Expect = 0.22
Identities = 29/142 (20%), Positives = 54/142 (38%)
Frame = +2
Query: 173 VRRDAPDFFKDIEHHTKEFHKTLQQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKS 352
++ + + K++E + HK Q + D + +K K +E LN+F
Sbjct: 25 LKEETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEKEDTFLNSF--- 81
Query: 353 LQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQ 532
A GD K L + + +E + K ++EK + KL+ A + Q
Sbjct: 82 --NASGDLTANKKIQLREQSRKLEESLLSYHKKVKEMEKQHRSASSKLELAKLSAQQLQT 139
Query: 533 KLAKKVSSNVQETNEKLAPKIK 598
+ S N E + + + K
Sbjct: 140 NVNVLRSQNNPEILQDMISETK 161
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.38
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Frame = +2
Query: 383 KAKEALE---QSRQNIERTAEELRKAHPDVEKNATALREKLQAAV-----QNTVQESQKL 538
K KE +E Q ++ +ER E LRK D K+ + +AA+ + + E QKL
Sbjct: 128 KEKEEMEGSLQGKEKLEREVENLRK-ELDKYKDLVETEAEKRAAITKEECEKSWLEQQKL 186
Query: 539 AKKVSSNVQETNEKLAPKIK 598
K + T +KL KI+
Sbjct: 187 YKDMEQENASTIQKLTSKIR 206
>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 419
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/81 (20%), Positives = 38/81 (46%)
Frame = +2
Query: 335 NAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN 514
N + ++ AL + KA + LE+ ++ E + EE+ H + T+ + + +
Sbjct: 337 NLVSLAIYEALYEKFLKACKDLEEVSKSYEESREEIEALHETFTEEVTSFQSTKRLKEEK 396
Query: 515 TVQESQKLAKKVSSNVQETNE 577
+QE ++ K + Q+ +E
Sbjct: 397 IIQEKSRVDKMIDEYRQKLSE 417
>SPAC589.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 168
Score = 29.9 bits (64), Expect = 0.50
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 302 KDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 439
KDG+++ +LN FAK L + + +A + + IE+++ E
Sbjct: 111 KDGTDAFANELNLFAKKLGFSKNSFDARALDTESEDETEIEKSSSE 156
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.1 bits (62), Expect = 0.87
Identities = 21/88 (23%), Positives = 46/88 (52%)
Frame = +2
Query: 398 LEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNE 577
++ Q+IE T L K D+E++ +++ + V + Q+ ++++ +Q+T E
Sbjct: 496 MKTQEQSIELT--RLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKE 553
Query: 578 KLAPKIKAAYDDFAKNTQEVIKKIQEAA 661
L+ K + DD+ +EV+ K++ A
Sbjct: 554 VLSKSSKES-DDY----EEVVGKLRTEA 576
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/69 (24%), Positives = 38/69 (55%)
Frame = +2
Query: 383 KAKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 562
K+++ LE S Q +E E + P+V++ +EK ++ V+ +E +K+S N+
Sbjct: 132 KSEKPLETS-QKVEIETVETKPGEPEVKQETNLQKEKKESKVKLESKE-----EKISRNL 185
Query: 563 QETNEKLAP 589
+ ++ ++P
Sbjct: 186 RSSSRSISP 194
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.1 bits (62), Expect = 0.87
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Frame = +2
Query: 236 TLQQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGA------LGDANGKAKEA 397
T+Q + SL K D + ++ ES L L L A L D+ KAK
Sbjct: 354 TIQIELESLRKETDTTSVER--REKLESKLTDLKEEQDKLSAAWEEERKLLDSIKKAKTE 411
Query: 398 LEQSRQNIERTAEE 439
LEQ+R +ERT E
Sbjct: 412 LEQARIELERTQRE 425
>SPBC646.09c |int6|yin6|translation initiation factor
eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2
Query: 281 QDFSKAWKDGSESVLQQLNAFAKSLQGALGD-ANGKAKEALEQSR-QNIERTAE 436
+D + A+ + SVLQ+L+ + +QG LG N AL Q + QN++ E
Sbjct: 79 EDMANAFAEKRRSVLQELSELEEEVQGILGVLENPDLIAALRQDKGQNLQHLQE 132
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 28.3 bits (60), Expect = 1.5
Identities = 24/88 (27%), Positives = 45/88 (51%)
Frame = +2
Query: 206 IEHHTKEFHKTLQQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 385
IE K F K ++ NS K+ +A F +G++ ++ + A ++L L +
Sbjct: 73 IESSMKSF-KPVKIDLNSQLKAINA--FEAKASEGAKKNVELVKAELQNLSATLKN---- 125
Query: 386 AKEALEQSRQNIERTAEELRKAHPDVEK 469
+EQ+R E T E++++A P++EK
Sbjct: 126 ----IEQARPTEEITIEDMKQAVPEIEK 149
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 321 TDSEPSFQA--LLKSCASFDLVSELNCCCKVLWNSLVWC 211
TDS PS A + SC + + LN C +W S C
Sbjct: 281 TDSNPSIDASEFILSCLPYTSLDALNVVCGQVWKSQKIC 319
>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 631
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 413 ASTVPKPPWPCRSRLRALPG 354
AST+ K PWP + L +PG
Sbjct: 38 ASTLEKEPWPASTALLVMPG 57
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 2.7
Identities = 27/108 (25%), Positives = 48/108 (44%)
Frame = +2
Query: 311 SESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEELRKAHPDVEKNATALRE 490
S + + A K L GA KAKE ++ R +RTA E+RK +E+ R
Sbjct: 143 SRRISGMILAHFKRLSGA---DEKKAKEEDKRIRLLAKRTAWEIRKKWKVIEREVRRRRA 199
Query: 491 KLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQE 634
+ A Q + Q +++ ++ + + L +I+ A + + T E
Sbjct: 200 ERAAEAQRVAGKEQ-----LANILKHSTDLLEARIERANINISAQTSE 242
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = +2
Query: 350 SLQGALGDANGKAKEALEQSRQNIE-----RTAEELRKAHPDVEKNATALREKLQAA 505
S++ L + N + KE +E + RT +E EKN LRE+L+ A
Sbjct: 520 SMKDDLTEMNQRLKEQIESYENEVNSEITSRTLKEFETLKTQYEKNLCNLREQLKTA 576
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +2
Query: 413 QNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQETNEKLAPK 592
+NI + E+ R + NA+ + K Q + T++ Q+LAK + +++ E+L+
Sbjct: 136 KNILKAIEDSRYPFVANKLNASTIEVKPQ---RTTLESRQQLAKVLEGYAKDSREQLSAM 192
Query: 593 IKAAYDDFAKN 625
+ AKN
Sbjct: 193 RTELKKEIAKN 203
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/86 (15%), Positives = 41/86 (47%)
Frame = +2
Query: 389 KEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQE 568
K ++R+N++ + + P+++ + + +L+ +++++ Q + + V+E
Sbjct: 81 KRRNRKARENLKVNVSSIGEVLPEIDLDISVANSRLKPVIKDSLSSKQTKSSMKRNTVEE 140
Query: 569 TNEKLAPKIKAAYDDFAKNTQEVIKK 646
E+ +K + F N E +++
Sbjct: 141 I-ERFQAILK--HPSFVSNPLETVRE 163
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 6.1
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 1/148 (0%)
Frame = +2
Query: 206 IEHHTKEFHKTLQQQFNSLTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGK 385
I + KE TL +Q +L ++ K +ES+L + N + L +
Sbjct: 574 ISNAVKENSNTLSEQIKNLESELNSS------KIKNESLLNERNLLKEMLATSRSSILSH 627
Query: 386 AKEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESQKLAKKVSSNVQ 565
S NI+ + + ++ ++EKN R ++ A ++ + +Q L ++ + +
Sbjct: 628 -----NSSAGNIDDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRK 682
Query: 566 E-TNEKLAPKIKAAYDDFAKNTQEVIKK 646
E N K ++ A N E KK
Sbjct: 683 ELENSKYQQQLSTDRLTNANNDVEAFKK 710
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 26.2 bits (55), Expect = 6.1
Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 146 CIALAQGAMVRRDAPDFFKDIEHHTKEFH-KTLQQQFNSLTKSKDAQDFSKAWKDGSESV 322
C + +G +RR P +++ I ++ KTL + FN+ + +++ + KA ++G V
Sbjct: 13 CEYVFKGDGLRRVPPYYYEYITFAKLRWYGKTLLEVFNTEFRDRESGYYEKAIRNGQVKV 72
Query: 323 LQQL 334
Q+
Sbjct: 73 NNQI 76
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +2
Query: 545 KVSSNVQET--NEKLAPKIKAAYD 610
+V N++ET EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322
>SPAC23H4.11c |cnl2||centromere localized protein
Cnl2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 8.1
Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +2
Query: 389 KEALEQSRQNIERTAEELRKAHPD--VEKNATALREKLQAAVQNTVQESQKLAKKVSSNV 562
++ L + R NI ++ + K+ D + N L+ A+ + V+E ++
Sbjct: 53 QKRLAKLRANIHLESQVIGKSRIDRMLATNVEKLQTVSHASTLHDVEEFYTSHSAKPLDI 112
Query: 563 QETNEKLAPKIKAAY 607
E NE+L+ +++AY
Sbjct: 113 SEINERLSEAVQSAY 127
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 208 DVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSRDLSAEE 83
D+L + G+ S + GQ E++YE D + SAE+
Sbjct: 824 DILSQFGNDKSFGNAAGQDVIEEDDYETDQQDASISNKSAED 865
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 8.1
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Frame = +2
Query: 260 LTKSKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKEALEQSRQNIERTAEE 439
+ S D+++ S+ D ++ L+ +NA Q + K+ E L SRQ+ A+E
Sbjct: 28 IASSSDSEEESEL--DTNKQALEHINA-----QKNITHNENKSAEPL--SRQSTILDADE 78
Query: 440 LRKAHPDVEKNATAL--REKLQAAVQNTVQE-----SQKLAKKVSSNVQETNEKLAPKIK 598
+ D NA R ++A+ Q + + A + +N + L+
Sbjct: 79 GNQDVSDTTPNACLNEGRHSPKSAISCVTQPVSPVYNTRAAANLRNNSINSEAALSTTSS 138
Query: 599 AAYDDFAKNTQEVIKKIQE 655
DDFA+ +E+ +++QE
Sbjct: 139 LLDDDFARRLEEIDRQVQE 157
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,823
Number of Sequences: 5004
Number of extensions: 37316
Number of successful extensions: 197
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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