Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A23
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    94   3e-20
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    87   3e-18
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    29   0.93 

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 93.9 bits (223), Expect = 3e-20
 Identities = 46/70 (65%), Positives = 56/70 (80%), Gaps = 1/70 (1%)
 Frame = +2

Query: 110 MPREIKDIKDFLIKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 286
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 287 LPPGLFXKEV 316
           LPP L   EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 43/70 (61%), Positives = 52/70 (74%), Gaps = 1/70 (1%)
 Frame = +2

Query: 110 MPREIKDIKDFLIKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 286
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 287 LPPGLFXKEV 316
           LPP L   EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
 Frame = +2

Query: 170 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLFXKEVK 319
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +   EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,644
Number of Sequences: 5004
Number of extensions: 38151
Number of successful extensions: 95
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)