Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A23
         (927 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.     125   2e-28
BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38 p...   125   2e-28
AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38 p...    72   3e-12
M99578-1|AAA36187.1|  550|Homo sapiens protein ( Human lymphocyt...    31   7.9  

>Z26876-1|CAA81488.1|   70|Homo sapiens ribosomal protein protein.
          Length = 70

 Score =  125 bits (302), Expect = 2e-28
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = +2

Query: 110 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 289
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 290 PPGLFXKEVK 319
           PPGL  KE+K
Sbjct: 61  PPGLAVKELK 70


>BC000603-1|AAH00603.1|   70|Homo sapiens ribosomal protein L38
           protein.
          Length = 70

 Score =  125 bits (302), Expect = 2e-28
 Identities = 59/70 (84%), Positives = 66/70 (94%)
 Frame = +2

Query: 110 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 289
           MPR+I++IKDFL+ ARRKDAKSVKIKKN +NVKFKVRCSR+LYTLVITDKEKAEKLKQSL
Sbjct: 1   MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSL 60

Query: 290 PPGLFXKEVK 319
           PPGL  KE+K
Sbjct: 61  PPGLAVKELK 70


>AB007185-1|BAA25844.1|   37|Homo sapiens ribosomal protein L38
           protein.
          Length = 37

 Score = 71.7 bits (168), Expect = 3e-12
 Identities = 33/37 (89%), Positives = 35/37 (94%)
 Frame = +2

Query: 209 FKVRCSRFLYTLVITDKEKAEKLKQSLPPGLFXKEVK 319
           FKVRCSR+LYTLVITDKEKAEKLKQSLPPGL  KE+K
Sbjct: 1   FKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 37


>M99578-1|AAA36187.1|  550|Homo sapiens protein ( Human lymphocyte
           surface protein exons 1-5, complete cds. ).
          Length = 550

 Score = 30.7 bits (66), Expect = 7.9
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 656 LRIGRSSASSLTDSPAPRXVRAAXXRVSAPPXGXGXXGYPXEIXGXPXGKNXVTXXXQQK 835
           L +    A++    PA R VR      +APP G      P    G P G+       +++
Sbjct: 456 LGVAHGPAAARPGHPADRVVRLCERHHAAPPRGPAPGRCPQGEPGPPRGRRRSQKRERER 515

Query: 836 GPG 844
           G G
Sbjct: 516 GRG 518


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,218,084
Number of Sequences: 237096
Number of extensions: 1561723
Number of successful extensions: 2428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2423
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12103451996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)