Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A21
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.8  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   4.6  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   5.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/45 (35%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = +1

Query: 721 PPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXR-GGXXPPP 852
           PP PP              PPP P       PPPP    G  PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 16/52 (30%), Positives = 17/52 (32%)
 Frame = +1

Query: 715 PXPPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRGGXXPPPRXLXXG 870
           P P   P              PPPPP       PPPP      PPP  +  G
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP-----PPPPPAVSAG 788


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 16/50 (32%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
 Frame = +1

Query: 712 PPXPPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRG---GXXPPP 852
           PP PP      A          PPPPP     +  PP   G      PPP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPP 339



 Score = 29.9 bits (64), Expect = 0.53
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
 Frame = +1

Query: 715 PXPPHPPXXXARGXXXXX-------AXXPPPPPXXPXXKXPPPPXRGGXXPPP 852
           P PP PP    RG               PPPPP        P P +G   PPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
 Frame = +1

Query: 715 PXPPHPPXXXARG-----XXXXXAXXPPPPPXXPXXKXPPPP 825
           P PP PP   A G          A  PPPP   P     PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 778 PPPPPXXPXXKXPPPPXRG 834
           PPPP   P  + PPPP  G
Sbjct: 13  PPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +1

Query: 712 PPXPPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRGG 837
           PP PP PP     G        PPPPP     +    P + G
Sbjct: 9   PPPPPPPP-----GFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
 Frame = +1

Query: 778 PPPPPXXPXXKXP--PPPXRGGXXPPP 852
           PPPPP  P  + P  PPP      PPP
Sbjct: 9   PPPPPPPPGFEPPSQPPP-----PPPP 30


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/46 (26%), Positives = 15/46 (32%)
 Frame = +1

Query: 712 PPXPPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRGGXXPP 849
           PP P   P   ++      +  PP  P  P    P  P      PP
Sbjct: 151 PPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +1

Query: 721  PPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRGGXXPPP 852
            PP  P   A          PPP    P    PP P      PPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 17/48 (35%), Positives = 18/48 (37%)
 Frame = -3

Query: 848 GGXXPPRXGGGGXXXXGXXGGGGGXXAXKXXXPRAXXXGGWGGXGGXR 705
           GG    R G GG       GG GG    +    R    GG GG  G R
Sbjct: 19  GGFNGGRGGFGGGRGGARGGGRGGARGGRGG--RGGARGGRGGSSGGR 64


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 4.6
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +1

Query: 721 PPHPPXXXARGXXXXXAXXPPPPPXXP 801
           P  PP    +      A  PPPPP  P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPPPTLP 247



 Score = 20.6 bits (41), Expect(2) = 4.6
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +1

Query: 781 PPPPXXPXXKXPPP 822
           PPPP  P     PP
Sbjct: 273 PPPPATPSQPPRPP 286


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +1

Query: 712 PPXPPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRG---GXXPPP 852
           P  PP  P   +RG     +     P      + PPPP R       PPP
Sbjct: 105 PSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPP 154


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/44 (34%), Positives = 15/44 (34%)
 Frame = +1

Query: 721  PPHPPXXXARGXXXXXAXXPPPPPXXPXXKXPPPPXRGGXXPPP 852
            PP PP   A          PP PP  P    P P    G  P P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPP--PSTAPPVPTPSAGLPPVP 1230


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
 Frame = -3

Query: 860 RXRGGGXXPPRXGGGGXXXXGXXGGGGGXXAXKXXXPRAXXXGGW-GGXGGXRXXXXFFX 684
           R   GG      GG G    G  GG GG              GG+ GG GG       F 
Sbjct: 183 RGHNGGGFGGFGGGSGGPPPGP-GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFG 241

Query: 683 GXP 675
           G P
Sbjct: 242 GGP 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,275,648
Number of Sequences: 5004
Number of extensions: 14900
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)