Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A19
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.5  
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    27   4.7  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   6.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/44 (34%), Positives = 16/44 (36%)
 Frame = +2

Query: 743 PXXRSXPFPPXXXXXXGXPXXXVPPXLPXXTPAXRXPPPXPPRP 874
           P     P PP      G P    PP +    P    PPP PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP----PPPPPPPP 783


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 103 MSDLSKNDVER-ASFAFSIYDFEGKGKID 186
           +++L   DV R  SF F +YDF G G +D
Sbjct: 605 IAELKFRDVMRNISFIFELYDFNGDGFMD 633


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 STLGDLLRALNSNPTLXTI 247
           +++GDLLRA   NPTL  I
Sbjct: 26  TSIGDLLRACGQNPTLAEI 44


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 127 VERASFAFSIYDFEGKGKIDAFNLGRS 207
           +E A    SIYDF    +I+A N+G+S
Sbjct: 117 IEDAPPTQSIYDFSSSRQINALNVGQS 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,043,729
Number of Sequences: 5004
Number of extensions: 27755
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)