Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A18
         (1120 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa GT...    39   0.029
AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens ...    36   0.27 
AK095662-1|BAC04601.1|  173|Homo sapiens te cotransporter).  pro...    32   4.4  

>AF286472-1|AAG00551.1|  567|Homo sapiens retinitis pigmentosa
           GTPase regulator protein.
          Length = 567

 Score = 39.1 bits (87), Expect = 0.029
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 2/101 (1%)
 Frame = +2

Query: 455 EKGKRKKXXXGRXEGXEKXXXGXXXGXXKXGRKXEGEXXGXKEKXGXKEG-XXGXXEXEK 631
           E+G+ +    G  EG E    G        G + EGE  G +E  G +EG   G  E E 
Sbjct: 375 EEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEG 434

Query: 632 XXGGXXXXEXXXGXG-XKEGXKXXXREEEEKXGXKXXKKXE 751
              G    E   G G  +EG +     E+E  G +  +  E
Sbjct: 435 EVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGEENRRNRE 475



 Score = 38.3 bits (85), Expect = 0.050
 Identities = 42/182 (23%), Positives = 62/182 (34%)
 Frame = +2

Query: 176 EGKEXXEXREXXGGRRXXKKXXXXKXKXXXXXGXRKXGKXRXRXFXG*XRKKVINXXXXX 355
           EG+E    RE   G R  K+    K +     G +  G+       G   +K        
Sbjct: 175 EGEEVEGEREKEEGERK-KEERAGKEEKGEEEGDQGEGEEEETEGRG--EEKEEGGEVEG 231

Query: 356 XXXXXXKKXXXXRKKKGKGXKXXXRGXXXXXXREKGKRKKXXXGRXEGXEKXXXGXXXGX 535
                 K      +++G+G +    G       E+ + +    G  EG E          
Sbjct: 232 GEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGE--GKGEEEGEEGEGEEEGEEG 289

Query: 536 XKXGRKXEGEXXGXKEKXGXKEGXXGXXEXEKXXGGXXXXEXXXGXGXKEGXKXXXREEE 715
              G + EGE  G +E  G  E   G  E E+   G    E   G G +EG +     EE
Sbjct: 290 EGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEE 349

Query: 716 EK 721
           E+
Sbjct: 350 EE 351



 Score = 36.3 bits (80), Expect = 0.20
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXK-KGRX 569
           E+++EKE +   EG  +   G +EKE     +  R  K+    + G    GEE + +GR 
Sbjct: 161 EEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRG 220

Query: 570 GGXKRXGXXKKXXXGXXKXKRXEGEXXGXXE 662
              +  G  +       K +R E E  G  E
Sbjct: 221 EEKEEGGEVEGGEVEEGKGEREEEEEEGEGE 251



 Score = 32.7 bits (71), Expect = 2.5
 Identities = 32/128 (25%), Positives = 47/128 (36%)
 Frame = +2

Query: 398 KKGKGXKXXXRGXXXXXXREKGKRKKXXXGRXEGXEKXXXGXXXGXXKXGRKXEGEXXGX 577
           K+ KG +   +G       E    +K   G  EG E           K  R+ E E    
Sbjct: 198 KEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGEVEEG-------KGEREEEEEEGEG 250

Query: 578 KEKXGXKEGXXGXXEXEKXXGGXXXXEXXXGXGXKEGXKXXXREEEEKXGXKXXKKXEXR 757
           +E+ G  E   G  E E+  G     E   G G +EG +     EEE+   +  ++ E  
Sbjct: 251 EEEEGEGEEEEGEGEEEEGEG-KGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGE 309

Query: 758 XXXKXXEG 781
              +  EG
Sbjct: 310 GEEEEGEG 317



 Score = 32.7 bits (71), Expect = 2.5
 Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
 Frame = +2

Query: 401 KGKGXKXXXRGXXXXXXREKGKRKKXXXGRXEGXEKXXXGXXXGXXKXGRKXEGEXXGXK 580
           +GKG +    G       E     +   G  EG E+          +   + EGE  G +
Sbjct: 270 EGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEE 329

Query: 581 EKX---GXKEGXXGXXEXEKXXGGXXXXEXXXGXGXKEGXKXXXREEE 715
           E+    G +EG  G  E E+   G    E   G G +E  +    EEE
Sbjct: 330 EEGEGKGEEEGEEGEGEGEEEE-GEGEGEDGEGEGEEEEGEWEGEEEE 376


>AK127997-1|BAC87222.1|  148|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46115 fis, clone TESTI2037085. ).
          Length = 148

 Score = 35.9 bits (79), Expect = 0.27
 Identities = 27/121 (22%), Positives = 48/121 (39%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXKKGRXG 572
           +KKK+K+ K   +   K K  +K+K++    +  + +KK    K       ++ KK +  
Sbjct: 3   KKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 62

Query: 573 GXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXRXXKXXRXEX 752
             K     KK      K KR + +       K   RRR       ++++ R  +  R   
Sbjct: 63  KKKNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRRR 122

Query: 753 R 755
           R
Sbjct: 123 R 123



 Score = 35.5 bits (78), Expect = 0.35
 Identities = 25/122 (20%), Positives = 49/122 (40%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXKKGRXG 572
           +KKK+K+ K   +   K K  +K+K++    +  + +KK    K       ++ KK +  
Sbjct: 7   KKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKN 66

Query: 573 GXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXRXXKXXRXEX 752
             K+    KK      K K+ + +       +   RRR       ++++ R  +  R   
Sbjct: 67  KKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRK 126

Query: 753 RG 758
            G
Sbjct: 127 EG 128



 Score = 34.7 bits (76), Expect = 0.62
 Identities = 25/121 (20%), Positives = 50/121 (41%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXKKGRXG 572
           +KKK+K+ K   +   K K  +K+K++    +  + +KK    K       ++ KK +  
Sbjct: 2   KKKKKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 61

Query: 573 GXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXRXXKXXRXEX 752
             K+    KK      K K+ + +     + +   RRR       ++++ R  +  R   
Sbjct: 62  KKKKNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRR 121

Query: 753 R 755
           R
Sbjct: 122 R 122



 Score = 34.7 bits (76), Expect = 0.62
 Identities = 25/121 (20%), Positives = 50/121 (41%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXKKGRXG 572
           +KKK+K+ K   +   K K  +K+K++    +  + +KK    K       ++ KK +  
Sbjct: 5   KKKKKKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKK 64

Query: 573 GXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXRXXKXXRXEX 752
             K+    KK      K K+ + +     + +   RRR       ++++ R  +  R   
Sbjct: 65  KNKKKKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 124

Query: 753 R 755
           R
Sbjct: 125 R 125



 Score = 33.9 bits (74), Expect = 1.1
 Identities = 25/121 (20%), Positives = 48/121 (39%)
 Frame = +3

Query: 393 EKKKEKEXKXXXEGXXKXKXGRKEKERXXXXEGXRGRKKXXXGKXGGXXXGEEXKKGRXG 572
           +KKK+K+ K   +   K K  +K+K++    +  + +KK    K       ++ KK    
Sbjct: 9   KKKKKKKRKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKKNKK 68

Query: 573 GXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXRXXKXXRXEX 752
             K+    KK      K K+ +         +   RRR       ++++ R  +  R E 
Sbjct: 69  KKKKKKKKKKKKKRKKKKKKKKKRRKRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRKEG 128

Query: 753 R 755
           +
Sbjct: 129 K 129


>AK095662-1|BAC04601.1|  173|Homo sapiens te cotransporter).
           protein.
          Length = 173

 Score = 31.9 bits (69), Expect = 4.4
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 4/114 (3%)
 Frame = +3

Query: 396 KKKEKEXKXXXEGXXKXKXGRKEKE--RXXXXEGXRGRKKXXXGKXGGXXXG--EEXKKG 563
           +KK K+     +G  + K GRK+ +        G  G+KK   G+ G    G  E  K+ 
Sbjct: 53  RKKGKKEGGGKKG--RSKVGRKKMDIWMERWMTGREGKKKEEGGRGGRKERGREERRKEA 110

Query: 564 RXGGXKRXGXXKKXXXGXXKXKRXEGEXXGXXEXKXXXRRRXGXXXXGKKKKXR 725
           R GG K  G          K K    E  G  E +   R R      G+K++ R
Sbjct: 111 REGGKKEEGTKMNRWIDGRKEKSRRKE--GMKERR--ERGRKERRERGRKERRR 160


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.310    0.140    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,760,092
Number of Sequences: 237096
Number of extensions: 459700
Number of successful extensions: 1347
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15534614606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)