Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A15
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.5  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   5.9  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   7.8  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    26   7.8  

>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
 Frame = +1

Query: 721 QIAY-SNLERN-C-FDKNVGLSF 780
           Q+ Y SNL++N C FDKNVGL F
Sbjct: 412 QVYYASNLDKNYCMFDKNVGLGF 434


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 673 VNFYVIENVGELALSVQIAYSNLERNCFDKNVGLSFNSFN 792
           + FYV+ NV E+A  +  A      +C   N  LSFN +N
Sbjct: 257 IRFYVLYNVLEIADRLCCALGQDVLDCLFSNHILSFNFWN 296


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 152 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 63
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 563 LSTQFCFEEIESKV*LKFTVEFSSC*YQAG 474
           +  Q  F +IES   L FTVEF S  YQAG
Sbjct: 350 VDAQTVFGDIESL--LTFTVEFHSRLYQAG 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,258
Number of Sequences: 5004
Number of extensions: 57123
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)