Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP22_F_A07
(875 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen... 32 3.1
X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1 p... 32 3.1
X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for ... 32 3.1
M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein. 32 3.1
M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen p... 32 3.1
BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha... 32 3.1
AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen... 32 3.1
AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain ... 32 3.1
X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen pr... 31 5.5
X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3 col... 31 5.5
BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein. 31 5.5
AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen... 31 5.5
AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens ... 31 5.5
AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein. 31 5.5
U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein. 30 9.6
U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein. 30 9.6
U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein. 30 9.6
J04974-1|AAA52034.1| 961|Homo sapiens COL11A2 protein. 30 9.6
J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein. 30 9.6
>Z74615-1|CAA98968.1| 1464|Homo sapiens prepro-alpha1(I) collagen
protein.
Length = 1464
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>X98705-1|CAA67261.1| 1069|Homo sapiens collagen type I alpha 1
protein.
Length = 1069
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>X07884-1|CAA30731.1| 472|Homo sapiens protein ( Human mRNA for
alpha-1(I) chain of procollagen type I. ).
Length = 472
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>M36546-1|AAA60150.1| 472|Homo sapiens COL1A1 protein.
Length = 472
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>M20789-1|AAB59373.1| 589|Homo sapiens alpha-1 type I collagen
protein.
Length = 589
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>BC036531-1|AAH36531.1| 1464|Homo sapiens collagen, type I, alpha 1
protein.
Length = 1464
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 292 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
>AF017178-1|AAB94054.2| 1461|Homo sapiens pro alpha 1(I) collagen
protein.
Length = 1461
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 289 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 342
>AB209597-1|BAD92834.1| 1467|Homo sapiens Collagen alpha 1 chain
precursor variant protein.
Length = 1467
Score = 31.9 bits (69), Expect = 3.1
Identities = 18/54 (33%), Positives = 21/54 (38%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P G G+ PR GE+GR PG R + A G P P GF
Sbjct: 295 PGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 348
>X15332-1|CAA33387.1| 1078|Homo sapiens alpha-1 (III) collagen
protein.
Length = 1078
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARG 652
P G G PR GE+GR PG R + ARG
Sbjct: 143 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 180
>X14420-1|CAA32583.1| 1466|Homo sapiens prepro-alpha-1 type 3
collagen protein.
Length = 1466
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARG 652
P G G PR GE+GR PG R + ARG
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
>BC028178-1|AAH28178.1| 1163|Homo sapiens COL3A1 protein protein.
Length = 1163
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARG 652
P G G PR GE+GR PG R + ARG
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
>AY016295-2|AAL13167.1| 1466|Homo sapiens type III preprocollagen
alpha 1 chain protein.
Length = 1466
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARG 652
P G G PR GE+GR PG R + ARG
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
>AK092711-1|BAC03955.1| 149|Homo sapiens protein ( Homo sapiens
cDNA FLJ35392 fis, clone SKNSH2000716. ).
Length = 149
Score = 31.1 bits (67), Expect = 5.5
Identities = 20/39 (51%), Positives = 20/39 (51%)
Frame = -2
Query: 565 RQGGGAYGKTPATRPFYGSWPFAGLLLTCSFLRYXPDSV 449
RQ G G A R F S P GLL CS LR PDSV
Sbjct: 69 RQHFGIPGYPEAARDFSSS-PAPGLLTLCSRLRAKPDSV 106
>AC066694-1|AAY24164.1| 1466|Homo sapiens unknown protein.
Length = 1466
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARG 652
P G G PR GE+GR PG R + ARG
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARG 327
>U32169-3|AAC50215.1| 1629|Homo sapiens Pro-a2(XI) protein.
Length = 1629
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P +G G K PR GEKG + PG+ A+G + P PVGF
Sbjct: 1114 PGIQGEPGVKGPRGERGEKGESGQPGE---PGPPGAKGPQGDDGPKGNPGPVGF 1164
>U32169-2|AAC50213.1| 1650|Homo sapiens Pro-a2(XI) protein.
Length = 1650
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P +G G K PR GEKG + PG+ A+G + P PVGF
Sbjct: 1135 PGIQGEPGVKGPRGERGEKGESGQPGE---PGPPGAKGPQGDDGPKGNPGPVGF 1185
>U32169-1|AAC50214.1| 1736|Homo sapiens Pro-a2(XI) protein.
Length = 1736
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P +G G K PR GEKG + PG+ A+G + P PVGF
Sbjct: 1221 PGIQGEPGVKGPRGERGEKGESGQPGE---PGPPGAKGPQGDDGPKGNPGPVGF 1271
>J04974-1|AAA52034.1| 961|Homo sapiens COL11A2 protein.
Length = 961
Score = 30.3 bits (65), Expect = 9.6
Identities = 19/54 (35%), Positives = 24/54 (44%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGF 604
P +G G K PR GEKG + PG+ A+G + P PVGF
Sbjct: 492 PGIQGEPGVKGPRGERGEKGESGQPGE---PGPPGAKGPQGDDGPKGNPGPVGF 542
>J03464-1|AAB59374.1| 1366|Homo sapiens COL1A2 protein.
Length = 1366
Score = 30.3 bits (65), Expect = 9.6
Identities = 25/88 (28%), Positives = 31/88 (35%)
Frame = -3
Query: 765 PXXRGXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPGIXXSPVGFRPPLT* 586
P G G+ R GE+GR PG R + + G P P GF P
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPNGSAGPPGF-PGAPG 262
Query: 585 ASIFVMLVRGAEPMEKRQQRGLFTVPGL 502
+ V A P RG +PGL
Sbjct: 263 PKGEIGAVGNAGPTGPAGPRGEVGLPGL 290
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,483,071
Number of Sequences: 237096
Number of extensions: 1949702
Number of successful extensions: 12133
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12094
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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