Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A07
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical ...    29   4.4  
CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.6  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.6  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.6  

>AF078786-2|AAC26941.1|  889|Caenorhabditis elegans Hypothetical
           protein M01G5.1 protein.
          Length = 889

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 765 PXXRGXXGEK-RPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETP 631
           P  RG  G + R   RGG +GR R  G R GR     RG    E P
Sbjct: 840 PRVRGRRGGRGRSGGRGGGRGRERDGGSR-GRGGRGGRGNSGNEPP 884


>CU457737-9|CAM36330.1|  281|Caenorhabditis elegans Hypothetical
           protein C52D10.13 protein.
          Length = 281

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 753 GXXGEKRPRFRGGEKGRTRXPGKRQGRXQESARGXFQGETPG 628
           G  GE+ P+   G+ GR   PG RQG   E  +    GE PG
Sbjct: 210 GEPGEQGPKGEAGQDGRPGQPG-RQGPQGEPGQNGKDGE-PG 249


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 486 SHVLSCVIXLILWITVLPPLSELIPLAA 403
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 486 SHVLSCVIXLILWITVLPPLSELIPLAA 403
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 486 SHVLSCVIXLILWITVLPPLSELIPLAA 403
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,788
Number of Sequences: 27780
Number of extensions: 275838
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)