Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP22_F_A02
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   2.2  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    27   5.0  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    26   8.7  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 449 NATALREKLQAAVXNTVQESQK-LAKKVSSNVQETNEKLAPKIKAAYDDFAKNTQXGDQE 625
           + TA ++   + V    QE+ K + K+VSSN     E+    + A    FAK     + +
Sbjct: 374 STTASKQDSPSTVPVDKQETAKPINKQVSSNETSAQEEPRESVAALRARFAKANVSENND 433

Query: 626 DPGRPPTAKQ*AS 664
            P  P TA + +S
Sbjct: 434 PPTFPKTAAKISS 446


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 331 SXAALGDANGKAKEALEQSRQNIERTAEE 417
           S A  G  NG+AKE  E+ R   ++T E+
Sbjct: 468 SSAKQGKGNGRAKETPEEKRARKKKTKED 496


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 524 KVSSNVQET--NEKLAPKIKAAYD 589
           +V  N++ET   EK A K+KA+YD
Sbjct: 299 EVDLNIEETVLKEKYADKVKASYD 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,397
Number of Sequences: 5004
Number of extensions: 33787
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)