Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_P23
(1180 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 29 0.14
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 33 0.52
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 33 0.52
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 33 0.52
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 2.1
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 2.1
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 2.1
Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical pr... 30 3.7
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 6.4
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 8.4
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 8.4
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 790 PPXKRXXLFXPPPXPPXGGXPPKPP 864
PP PPP P GG PP PP
Sbjct: 85 PPPPMFAGGIPPPPPMMGGIPPPPP 109
Score = 27.5 bits (58), Expect(2) = 0.14
Identities = 12/25 (48%), Positives = 12/25 (48%)
Frame = +1
Query: 790 PPXKRXXLFXPPPXPPXGGXPPKPP 864
PP PPP P GG PP PP
Sbjct: 66 PPPVPNGFIPPPPGP--GGIPPPPP 88
Score = 25.8 bits (54), Expect(2) = 0.14
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +1
Query: 985 PPKXFFXXGXPPXXXFFFXKKXPPPXXGGGKXNXXXXXXPPPPXXXXXXXXXXXPP 1152
PP F G PP PPP GG PPPP PP
Sbjct: 85 PPPPMFAGGIPP----------PPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQPP 130
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.7 bits (71), Expect = 0.52
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP GG PP PP
Sbjct: 759 PPPPPPPGGCPPPPP 773
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP G PP PP
Sbjct: 760 PPPPPPGGCPPPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.7 bits (71), Expect = 0.52
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP GG PP PP
Sbjct: 759 PPPPPPPGGCPPPPP 773
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP G PP PP
Sbjct: 760 PPPPPPGGCPPPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.7 bits (71), Expect = 0.52
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP GG PP PP
Sbjct: 342 PPPPPPPGGCPPPPP 356
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP G PP PP
Sbjct: 343 PPPPPPGGCPPPPPP 357
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 881 FGGXKXGGLGGXPPXG-GXGGGXNKXXLXKGG 789
FGG K GG GG G G G G N GG
Sbjct: 216 FGGGKSGGFGGGNSGGSGFGSGGNSNGFGSGG 247
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 881 FGGXKXGGLGGXPPXG-GXGGGXNKXXLXKGG 789
FGG K GG GG G G G G N GG
Sbjct: 216 FGGGKSGGFGGGNSGGSGFGSGGNSNGFGSGG 247
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 30.7 bits (66), Expect = 2.1
Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 881 FGGXKXGGLGGXPPXG-GXGGGXNKXXLXKGG 789
FGG K GG GG G G G G N GG
Sbjct: 216 FGGGKSGGFGGGNSGGSGFGSGGNSNGFGSGG 247
>Z74032-9|CAA98464.2| 80|Caenorhabditis elegans Hypothetical
protein F35B12.7 protein.
Length = 80
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 881 FGGXKXGGLGGXPPXGGXGG 822
+GG + GG GG P GG GG
Sbjct: 38 YGGGRYGGYGGRGPYGGYGG 57
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP P GG PP PP
Sbjct: 580 PPPPPMLGGPPPPPP 594
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 820 PPPXPPXGGXPPKPP 864
PPP PP G PP PP
Sbjct: 579 PPPPPPMLGGPPPPP 593
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 118 PPPPPXXKKXXXGXXXXXLXKKXXPPXXXGGPPXGGAXXGPPKFSXXAPGXXP 276
PPPPP G PP G P GG PP PG P
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP-GMRYPGGMP 348
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.7 bits (61), Expect = 8.4
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 118 PPPPPXXKKXXXGXXXXXLXKKXXPPXXXGGPPXGGAXXGPPKFSXXAPGXXP 276
PPPPP G PP G P GG PP PG P
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPP-GMRYPGGMP 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,138
Number of Sequences: 27780
Number of extensions: 284808
Number of successful extensions: 1362
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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