Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P18
         (995 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.066
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    26   9.5  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect(2) = 0.066
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 853 PPXTKQPGHPPTGKXXXRKKXXXPPPPP 936
           PP  +  G PP G          PPPPP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 21.4 bits (43), Expect(2) = 0.066
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +1

Query: 922 PPPPPPQ 942
           PPPPPP+
Sbjct: 361 PPPPPPR 367


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.2 bits (50), Expect(2) = 1.1
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +1

Query: 871 PGHPPTGKXXXRKKXXXPPPPPP 939
           P  PPT           PPPPPP
Sbjct: 221 PEIPPTYTPKQADPLPAPPPPPP 243



 Score = 23.0 bits (47), Expect(2) = 1.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 922 PPPPPPQXP 948
           PPPPPP  P
Sbjct: 239 PPPPPPTLP 247


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +1

Query: 853 PPXTKQPGHPPTGKXXXRKKXXXPPPPPPQXPXTXXG 963
           PP     G PP            PPPPPP  P    G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +1

Query: 853 PPXTKQPGHPPTGKXXXRKKXXXPPPPPP 939
           PP    P  PP G          PPPPPP
Sbjct: 5   PPGNPPPPPPPPG---FEPPSQPPPPPPP 30


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/39 (28%), Positives = 13/39 (33%)
 Frame = +1

Query: 823  PPXXXXGAXNPPXTKQPGHPPTGKXXXRKKXXXPPPPPP 939
            P      A +P    +P  P             PPPPPP
Sbjct: 1064 PSTVTSAASSPSNISKPSAPVANNVSKPSAVPPPPPPPP 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.130    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,273
Number of Sequences: 5004
Number of extensions: 16196
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 515273988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)