Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P11
         (936 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...   127   2e-30
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.2  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    27   5.0  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    26   6.6  

>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score =  127 bits (307), Expect = 2e-30
 Identities = 55/103 (53%), Positives = 76/103 (73%)
 Frame = +2

Query: 68  EPPAGVVXREGXNYNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAKDVATFLKWCSE 247
           EPPAGV   +G N+NP+FPG  I+MA+ LFD+A E+ DGTPAT +Q AKDV  FL W SE
Sbjct: 201 EPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASE 260

Query: 248 PELDDRRQMTIKAIGMFSMLAAVVYYYKRHKWSTLKSRKLAYK 376
           PELD R++M  + I + ++L A+  +YKR KW+ +K+RK+ Y+
Sbjct: 261 PELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNRKIFYQ 303


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 62  TLEPPAGVVXREGXNYNPYFPGGAISMAQVLFDEAAEYSDGTPATAS 202
           T+ P + V      NY PY    ++S + +L +     S  TP TAS
Sbjct: 57  TIYPTSNVASNTSENY-PYTGSKSLSSSSILSNSTISTSSSTPITAS 102


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/77 (24%), Positives = 32/77 (41%)
 Frame = +2

Query: 161 EAAEYSDGTPATASQLAKDVATFLKWCSEPELDDRRQMTIKAIGMFSMLAAVVYYYKRHK 340
           +AA+ SD    T       +A F+   S P LD+  QMT        +   +++Y     
Sbjct: 202 DAAQDSDKLVYTGDWDPASIADFIGVSSIPLLDELNQMTFGKYQQSGLPLGIIFYNSTES 261

Query: 341 WSTLKSRKLAYKPVSKK 391
              L      ++P++KK
Sbjct: 262 RDELYD---VFQPLAKK 275


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 263 GRPVRVLSTISRKSQHPWRAVTQSPACRHC 174
           GRP R+L+ +  +S+ PWR + +      C
Sbjct: 16  GRPKRILAPMVDQSELPWRILARRSGADLC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,166,161
Number of Sequences: 5004
Number of extensions: 57741
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)