Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P10
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.076
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.13 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.53 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.076
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +3

Query: 711 PXPPPPRXKXXKXXPPXGGGPPPPXXXKXXXGXPPXNPPXXP 836
           P P P         P  GG PPPP         PP  PP  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 31.1 bits (67), Expect = 0.23
 Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
 Frame = +3

Query: 708 NPXPPPPRXKXXKXXP---------PXGGGPPPPXXXKXXXGXPPXNPPXXP 836
           +P PPPP        P         P  GGPPPP       G  P  PP  P
Sbjct: 731 SPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
 Frame = +3

Query: 657 PPXXKAPKNXXGGXFXVNPX----PPPPRXKXXKXXPPXGGGPPPPXXXKXXXGXPPXNP 824
           PP    P++   G   + P     PPPP  +      P  G  PPP         PP  P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA----PSTGRQPPPLSSSRAVSNPPAPP 392

Query: 825 PXXP 836
           P  P
Sbjct: 393 PAIP 396



 Score = 31.5 bits (68), Expect = 0.18
 Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
 Frame = +3

Query: 711 PXPPPPRXKXXKXXPPXGGG-------PPPPXXXKXXXGXPPXNP 824
           P PPPP  +  +  PP G G       PPPP       G  P  P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = +3

Query: 723  PPRXKXXKXXPPXGGGPPPPXXXKXXXGXPPXNPPXXP 836
            PP+       PP    PPPP       G P   PP  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +1

Query: 664  PXKPQKTXXXGXLXLTPXPPPPGXXKXKXXPXXGGGPP 777
            P +PQ          TP PPP         P    GPP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 711 PXPPPPRXKXXKXXPPXGGGPPPPXXXKXXXGXPP 815
           P PPPP  +     PP    PPPP   K      P
Sbjct: 11  PPPPPPGFEPPSQPPP----PPPPGYVKKRKNKTP 41



 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +3

Query: 708 NPXPPPPRXKXXKXXPPXGGGPPPP 782
           NP PPPP        PP    PPPP
Sbjct: 8   NPPPPPP---PPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.150    0.520 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,757
Number of Sequences: 5004
Number of extensions: 14961
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)