Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P04
         (931 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    33   0.43 
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631...    31   1.7  
05_03_0164 - 9078814-9079908                                           28   9.2  

>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 32.7 bits (71), Expect = 0.43
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 578 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 486
           R++ CD  PS  R   RL C CSYQ    +SPR
Sbjct: 29  RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61


>12_02_0522 - 19960092-19960595,19962737-19962880,19963042-19963131,
            19963215-19963320,19963400-19963574,19963849-19963951,
            19964382-19964636,19964726-19964803,19964908-19965000,
            19965091-19965222,19965898-19966002,19966127-19966201,
            19966284-19966340,19966419-19966532,19966613-19966756,
            19966886-19966969,19967071-19967164,19967244-19967369,
            19967507-19967580,19967672-19967875,19968234-19968388,
            19968860-19968947,19969505-19969730,19970235-19970286,
            19970766-19970958,19973221-19973314,19973744-19973788,
            19974874-19974896
          Length = 1210

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 9/110 (8%)
 Frame = +2

Query: 302  GYNREIFNDDRGQLTGQAYGTRVLGPGGDSTNYGGRLDW--ANKNAQAAIDINRQIG--- 466
            G   E+  D R +L G+     + G  G+    GG      A    +A  + +  +    
Sbjct: 1073 GNELELAGDHREELGGRGDELELAGDHGEELGGGGTSSSSPATTGRRAMEETSSSLPAAL 1132

Query: 467  GRSGMTASGSGVWD---LDKNTHISAGGMVSKE-FGHRRPDVGLQAEIRH 604
            G  G T SG G WD   L+    +  GG   +   G RR  +GL + I H
Sbjct: 1133 GTGGGTESGGGAWDELELELADGVRRGGKERRRAAGRRRRALGLGSGIGH 1182


>05_03_0164 - 9078814-9079908
          Length = 364

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 368 VLGPGGDSTNYGGRLDWANKNAQAAIDINRQIGGRSGMTASGSGVWDLDKNTHISAGGMV 547
           V+G  G +++    LD+ +  A A +  NR+ G ++     G  +  L  N H S G   
Sbjct: 85  VVGDAGATSDGLLLLDFTDIRATARVVANRRAGAQAQAQQQGKKLTGLSFNLHNSRGDTQ 144

Query: 548 SKEFG--HRRPDV 580
            +E    +  PD+
Sbjct: 145 ERELAGVNTNPDI 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,217,885
Number of Sequences: 37544
Number of extensions: 557836
Number of successful extensions: 1263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2659245980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)