Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P03
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0050 + 20285475-20286092,20287481-20287840                       36   0.044
05_05_0352 + 24328117-24328303,24328451-24328559,24330634-243306...    32   0.54 
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    31   0.95 
10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593     31   1.3  
10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    29   6.7  
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011...    28   8.8  

>03_05_0050 + 20285475-20286092,20287481-20287840
          Length = 325

 Score = 35.9 bits (79), Expect = 0.044
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 223 PYVPATTEQLLGVTKALKGRRGRLIDIGSGDGRIVITAAKMGFKADGVELNPFLVYYSRI 402
           P +  T +QLLG    + G RG ++D+G+  G     AA MGF+   V   P L    RI
Sbjct: 119 PDISETIQQLLGGKVGI-GSRGVVVDVGANVGMASFAAAVMGFRV--VAFEPVLENLQRI 175

Query: 403 --SALLNQKYYDTKFYH 447
                LN+       YH
Sbjct: 176 CDGVYLNRVQDQVVVYH 192


>05_05_0352 +
           24328117-24328303,24328451-24328559,24330634-24330692,
           24331139-24331220,24331361-24331481,24331751-24332278,
           24332724-24332831,24332934-24333131,24334043-24334234,
           24336116-24336199,24336385-24336525,24336683-24336748,
           24336880-24337047,24337134-24337463,24337568-24337666
          Length = 823

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = +1

Query: 232 PATTEQLLGVTKALKGRRGRLIDIGSGDGRIVITAAKMGFK-ADGVELNPFLVYYSRISA 408
           P T   LL + + +KG   R +D G+G G + I A KMG   ++G++++P  V  +  + 
Sbjct: 646 PTTKLCLLLLRETVKGGE-RFLDYGTGTGVLGIAALKMGAALSNGIDIDPQAVTSACENM 704

Query: 409 LLN 417
           +LN
Sbjct: 705 MLN 707


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
 Frame = +1

Query: 106 PSKLSLVGKILIYTTGGLAIGVSIVCIPFVSPAARKICLPYVPATTEQLLGVTKALKGRR 285
           P + + V  + +     LA G     +P      R   LP+     E L    +A  GRR
Sbjct: 4   PPEFAAVAAVAVVAALVLAAGAGAAPLPAALRLER--ALPHKGVAVEHLRERDRARHGRR 61

Query: 286 GRLIDIGSGDGRIVITAAKMGFKADGVELNPFLV--YYSRI 402
           G L   G G G +   A  + F  +G   NPF+V  Y++R+
Sbjct: 62  GLL---GGGGGGV---AGVVDFPVEG-SANPFMVGLYFTRV 95


>10_08_0327 + 16797366-16800639,16800979-16801067,16801120-16801593
          Length = 1278

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 626 TPCPIVSTGTIVGNGNRHATTTVCSCISSKILFS-ISCII 510
           TPC I STG+  G+  R    TV S +   +L + ++CII
Sbjct: 834 TPCDISSTGSSSGHHKRVVIATVVSVVGVVLLLAVVTCII 873


>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 608 STGTIVGNGNRHATTTVCS-CISSKILFSISCIICSTPNITTLL 480
           S   + G   +H  TT+CS C  S  L    C++CS P IT L+
Sbjct: 17  SPSDLYGTSCKH--TTLCSSCGKSMALSGARCLVCSAP-ITNLI 57


>04_03_0055 +
           10299539-10299703,10300042-10300746,10301025-10301116,
           10302896-10303313
          Length = 459

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +1

Query: 463 FNLKPYNNVVIFGVEQMMHDIENKILDEMQEHTVVVACRFPLPTMVPVETIGHGVDTV 636
           F  K  NN +   +EQ+ H  +  + +EMQ  +  ++  F +     V  +GH +  +
Sbjct: 52  FRRKDENNALEVQIEQIQHHQQADVHEEMQHDSASIS-DFSMHETASVNNMGHEIQLI 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,022,728
Number of Sequences: 37544
Number of extensions: 382295
Number of successful extensions: 889
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)