Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P03
         (904 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical...   158   6e-39
Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical pr...    34   0.12 
Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical p...    31   0.85 
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    30   2.0  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    30   2.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    30   2.6  
Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AL031633-23|CAA21030.1|  188|Caenorhabditis elegans Hypothetical
           protein Y39A1A.21a protein.
          Length = 188

 Score =  158 bits (383), Expect = 6e-39
 Identities = 80/184 (43%), Positives = 114/184 (61%), Gaps = 10/184 (5%)
 Frame = +1

Query: 127 GKILIYTTGGLAIGVSIVCIPFVSPAARKICLPYVPATTEQLLGVTKALK-------GRR 285
           G ++    G  A+ +S   IPFV+PA R++C+PYVPATTEQL  V++AL         ++
Sbjct: 4   GLVIAGVAGATALAISAAAIPFVAPALRRVCIPYVPATTEQLANVSRALSLATSSNSNKK 63

Query: 286 GRLIDIGSGDGRIVITAAKMGFKADGVELNPFLVYYSRISALLNQKYYDTKFYHCDLWKF 465
           G LID+GSGDGR+V+  A+ GF + GVELN  LV YS+  ++      +T+F   +++K 
Sbjct: 64  GTLIDLGSGDGRVVLQCAREGFNSTGVELNSILVAYSKYRSIREGLGKETRFMRKNIFKT 123

Query: 466 NLKPYNNVVIFGVEQMMHDIENKILDEMQEHTVVVACRFPLP---TMVPVETIGHGVDTV 636
           +L PY   VIFG E +M D+  K L EM+ +T ++ACRFPLP          IG G+D V
Sbjct: 124 DLNPYQTAVIFGAESLMGDLVPK-LSEMRSNTNLLACRFPLPENDAWKLEHQIGEGIDAV 182

Query: 637 WKYE 648
           W Y+
Sbjct: 183 WVYK 186


>Z35640-6|CAA84702.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = +1

Query: 103  VPSKLSLVGKILIYTTGGLAIGVSIVCIPFVSPAARKICLPYVPATTEQLLGVTKALKG 279
            +PS +SL   I ++T+G LA GV+IV + FVS     + L   PA T  LL  + A+ G
Sbjct: 852  IPSSMSLRHDISVFTSGMLAFGVAIVMLFFVS-----LLLLGQPALTVMLLITSIAVLG 905


>Z35639-9|CAA84700.2| 1226|Caenorhabditis elegans Hypothetical protein
            F43D9.1 protein.
          Length = 1226

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 24/59 (40%), Positives = 34/59 (57%)
 Frame = +1

Query: 103  VPSKLSLVGKILIYTTGGLAIGVSIVCIPFVSPAARKICLPYVPATTEQLLGVTKALKG 279
            +PS +SL   I ++T+G LA GV+IV + FVS     + L   PA T  LL  + A+ G
Sbjct: 852  IPSSMSLRHDISVFTSGMLAFGVAIVMLFFVS-----LLLLGQPALTVMLLITSIAVLG 905


>Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical
           protein Y57G11C.11a protein.
          Length = 268

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 289 RLIDIGSGDGRIVITAAKMGFKADGVE 369
           RL+D+GSG G + I  A+ GF   G++
Sbjct: 78  RLVDVGSGGGLLSIPLARSGFDVTGID 104


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +1

Query: 97  IIVPSKLSLVGKILIYTTGGLAIGVSIVCIPFVSPAARKICLPYVPATTEQLLGVTKALK 276
           I +PS  +  G  L  T+      +S  C P  +PA  K   P V  T  + + +T+AL 
Sbjct: 293 IFMPSSTAKDGSSLNCTSCSSPTTISTNCAPIPAPADDKYFTP-VSRTEARCIRLTRALN 351

Query: 277 GRRG 288
           G+ G
Sbjct: 352 GQSG 355


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 671  VAT*LIFTSYFQTVSTPCPIVSTG-TIVGNGNRHATTTVCSCISSKILFSISCIICST-P 498
            VA  +  T   + ++ P      G T  G  N    T +C C   +I+F++ C+   T P
Sbjct: 871  VALPMSTTPKMRVIAKPLESCENGETCEGGSNCDYDTGICMCPPGQIVFNVQCMPPPTQP 930

Query: 497  NITT 486
             ITT
Sbjct: 931  QITT 934


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 671  VAT*LIFTSYFQTVSTPCPIVSTG-TIVGNGNRHATTTVCSCISSKILFSISCIICST-P 498
            VA  +  T   + ++ P      G T  G  N    T +C C   +I+F++ C+   T P
Sbjct: 968  VALPMSTTPKMRVIAKPLESCENGETCEGGSNCDYDTGICMCPPGQIVFNVQCMPPPTQP 1027

Query: 497  NITT 486
             ITT
Sbjct: 1028 QITT 1031


>Z75711-2|CAB00033.2|  425|Caenorhabditis elegans Hypothetical
           protein K02B12.3 protein.
          Length = 425

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 274 KGRRGRLIDIGSGDGRIVITAAKMGFKADGVELNPFL 384
           K  RG++   G  DG I I  A++ F+A+  +  P L
Sbjct: 152 KSSRGKIFATGGADGHIRIWNAQIVFRAENEDAQPIL 188


>Z22181-2|CAA80180.1|  510|Caenorhabditis elegans Hypothetical
           protein ZK632.3 protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 391 YSRISALLNQKYYDTKFYHCDLWKFN--LKPYNNVVIFGVEQMM 516
           Y ++ +++ + Y +    H DL +FN  L P N V +  V Q M
Sbjct: 368 YDQVQSIMCRMYKECLLVHADLSEFNLLLTPDNKVHVIDVSQAM 411


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,796,000
Number of Sequences: 27780
Number of extensions: 361892
Number of successful extensions: 968
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)