Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_P01
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit...    29   0.69 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   2.1  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    27   4.8  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.4  
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa...    26   6.4  

>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
           Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 354

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 589 RIWR*SVKNYN--IFCEEINDFFKK*YVKIAPNYLRLFVRLTVIE 717
           R W    +N N  IFC  +ND+ KK Y + AP   RL   +++ +
Sbjct: 207 RKWIYCFENVNSIIFCVSLNDYDKKLYERAAPERNRLVESISLFD 251


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 426 TPSASTCTAISRLNKSMTVCSIHT*ASIPNKTTEPNSG-TSXFKRSCNSGVYIENLVFSY 250
           T S++T T+    + S +V S+HT   +PN   + NS  T+    S +   ++    FS 
Sbjct: 198 TTSSATHTSQFSTSSSSSVNSVHTPVMVPNPYFQYNSSMTAPSSSSSSVAPFVPRRQFSV 257

Query: 249 TKAA 238
           + A+
Sbjct: 258 SSAS 261


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 452 LCPSEILRRH--RQLAHVLQYLDSTNQ*LFALYTHEPQFQTRQRSPIQERPXSSVLATQ 282
           L P E+ R +   +L+   Q L    + L     H+PQF+   R  +      +VLATQ
Sbjct: 487 LSPEELSRTYVTNELSSPEQVLQKARRVLAEEIIHDPQFRKSFRDKLYNAGVVTVLATQ 545


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 21/71 (29%), Positives = 38/71 (53%)
 Frame = +2

Query: 182 SEQYPKGLGHTTKDIKLEDAALVYEKTKFSMYTPELQERLXKDVPELGSVVLFGIEAHVC 361
           ++Q   G+G+T +D++    A    KT   MY   LQ+R  + V E  +++   +EA   
Sbjct: 166 AQQQMHGVGNTNEDVENWLDAASMPKTSHDMY--RLQKRKLQWVKEERTMLANHLEA--- 220

Query: 362 IEQTVIDLLSR 394
           +E+ +ID  +R
Sbjct: 221 LERKLIDARNR 231


>SPBC1685.08 |||histone deacetylase complex subunit
           Cti6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 328 RCLVWN*GSCVYRANSH*FVESRYCSTC 411
           +C VW  G+CV  A+     E  YC  C
Sbjct: 73  QCSVWQHGNCVGFADESEVPEVYYCEIC 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,286
Number of Sequences: 5004
Number of extensions: 61950
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)