Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_O24
         (1200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.0  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   5.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 64  PNXWGXPXPPPPPGXFXXFPP 2
           P   G P PPPPPG     PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -1

Query: 63  PXGGDXPXPPPPPXXFXFSPP 1
           P  G  P PPPPP      PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
 Frame = +2

Query: 350 TXKXXXXSIKTXXXNKKKSPPXXLQKXXKRRDXPXXX--HXTPPKXVPWXKXPPQGXPTK 523
           T +     +K    +K+ S     Q     ++ P       T PK  PW   PP+  P+ 
Sbjct: 579 TKQEKPSKLKETVESKRLSTGVQKQSPAASKEIPVTSGSQTTAPKPSPWKSLPPKHLPSL 638

Query: 524 KET 532
            ET
Sbjct: 639 DET 641


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,322
Number of Sequences: 5004
Number of extensions: 20375
Number of successful extensions: 59
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)