Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_O14
(859 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 54 3e-08
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 54 3e-08
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 54 3e-08
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 54 3e-08
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 54 3e-08
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 36 0.007
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 30 0.37
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 7.9
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 7.9
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 106
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 182
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 258
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 334
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 53.6 bits (123), Expect = 3e-08
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
MQIFVKTLTGKTITLEVE SD I+NVK KI
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKI 30
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +3
Query: 201 MQIFVKTLTGKTITLEVEPSDPIENVKXKI 290
M I VKTLTGK I L+++P+D + +K ++
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERV 30
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 215 HKDLHDDLEDTIISLLSVVCRTIMSFVFYIKQNGVEKHLILNYK 84
H + E++I S L+ C+ I V IK VEK L LN+K
Sbjct: 599 HSLRDSNTENSIPSPLTFACKEIRKLVADIKPVSVEKQLALNWK 642
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 170 LSVVCRTIMSFVFYIKQNGVEKHLILNY 87
LS +C+TI+S + + + V L +NY
Sbjct: 1737 LSEICKTIISMIKVVADSSVVPDLTINY 1764
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 25.8 bits (54), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 71 RDRQAYSLK*GVFLLHFVLYKKQSS*LFDI 160
++RQAY+ VF H+ LY Q S F I
Sbjct: 354 KERQAYNALSSVFEPHYTLYFNQQSQEFSI 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,325
Number of Sequences: 5004
Number of extensions: 41121
Number of successful extensions: 93
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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