Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_O10
         (933 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    28   2.2  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    27   5.0  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.7  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 628 ANKGVTTYFSSNCTEEDSNLVNDW 699
           AN+  T  +S +CT+EDS ++  W
Sbjct: 646 ANRNDTHLWSYDCTDEDSAIIGPW 669


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 30/114 (26%), Positives = 48/114 (42%)
 Frame = +3

Query: 186 LDSSQAFDNLTTNEKLYAHYLSQAAWNGGLIVLVQTSPESPKIFSLLHRVFVAEPLENLK 365
           LD   AF +L  N     +  S+  WN  L V+  T+       SLL   ++  P+  + 
Sbjct: 406 LDQGSAFPSLAKNP---VNPYSKDTWN--LNVIASTNG------SLLS--YIDNPVSGIT 452

Query: 366 QSALKSGVSEDEFQAFLVYAGGLFANSGNYKGFGDTKFIPNLPAESLELILKAS 527
              L  G+    F  F  +    +  S NY+ +GDTK    +P +  E   +A+
Sbjct: 453 CPWLYVGMC---FSTFCWHVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAA 503


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 480 IPNLPAES-LELILKASKAYENDNTH 554
           + NLP E+ L+ +L   + +ENDN H
Sbjct: 305 LKNLPEEATLDCMLSICQVFENDNLH 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,820,984
Number of Sequences: 5004
Number of extensions: 79854
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)