Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_O08
(925 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 31 0.23
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 29 0.70
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 29 0.93
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 29 1.2
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 28 2.1
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 27 2.8
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 27 2.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.5
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 26 6.5
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 6.5
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 8.6
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 26 8.6
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 8.6
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 26 8.6
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 31.1 bits (67), Expect = 0.23
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Frame = +2
Query: 119 VGRTRRTRVYDCNYNKGESYYRPVLDRLDGKAPIVR-----EPERESIRA-DVDNRIKSA 280
V T ++RV + + Y D LD P+ +PE S A D I
Sbjct: 401 VPETDKSRVLNLLAMAEDDEYDDTYDDLDTTGPVDSGVGDDDPEASSKDAHDFQKFINQT 460
Query: 281 LHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITESLKRL--RASKKTSRFADDI 454
L+D N E+FD + +++ L + L++ +E I E +R+ SK ++
Sbjct: 461 LYDFYQQNPEVFDQKARKSKERADLLAKLDNSLTHEQI-EGWRRMFTTDSKFAEAVKKEV 519
Query: 455 DFENSVTNL 481
F + TN+
Sbjct: 520 TFGSGNTNI 528
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 29.5 bits (63), Expect = 0.70
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 269 IKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITESLKRLRASKKTSRFAD 448
I S L D + D R R R SS +DD+ + E + RA + SR+ D
Sbjct: 132 ITSLLEDEHALKEARGDSRERDRDRDRTRSSRFDDDDDDRAPYEESRLSRAPSRASRYDD 191
Query: 449 D 451
D
Sbjct: 192 D 192
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.93
Identities = 22/99 (22%), Positives = 41/99 (41%)
Frame = +2
Query: 221 VREPERESIRADVDNRIKSALHDMETPNDELFDFRGARAQRGRPLSSALEDDEFNEDITE 400
+++ +++ ++D R+ + E ND DF Q LS + F E
Sbjct: 288 IKKSKKKKSKSDRRKRLVELDAENENENDPS-DFVLPNGQSNSDLSVEQDSAIFKEQKKM 346
Query: 401 SLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE 517
+++ +T FADD D + S+ + KIL+
Sbjct: 347 KIQKRMRELETQSFADDDDLQQSIAMQRRLAQKRAKILK 385
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 526 PDAFEYFVRNPHSVFEIGDAVLKVDVVSEPRSLFARAQAFQRFCDV 389
PD F+RN +S+F+I A L V V E Q F R ++
Sbjct: 442 PDFVTTFLRNANSIFKIRGASLSVQGVDELPFKMLFMQLFDRILEI 487
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 27.9 bits (59), Expect = 2.1
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Frame = +2
Query: 359 SALEDDEFNEDITESLKRLRASKKTSRFA-----DDIDFENSVTNLENRMRISDKILESV 523
SA D+E+ +D+ + +KKTSR + +D+ + +NL +I+ + +
Sbjct: 120 SASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCL 179
Query: 524 GIGHSEVSSARRALQDNEERTEKRIARRLEDNSLTK 631
S SS+ + ++ ++ + +D+S+TK
Sbjct: 180 NSPSSPSSSSSPYKNKDNSKSNSLLSFKTDDDSITK 215
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.8
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 368 EDDEFNEDITESLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE 517
ED+E+N T+ +++ SKK ++ ++ + L +MR + K LE
Sbjct: 390 EDEEYNNPSTQKTEKVSQSKKGAKVKEEKGLKKD-RKLPKKMRKAQKKLE 438
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Frame = +2
Query: 353 LSSALEDDEFNEDITESLKRLRASKKT------SRFADDIDFENSVT 475
L+ L+ +E+++ SL++ R K S F DD+DFENS++
Sbjct: 108 LNEKLDLEEWHQKFWWSLRKKRNLPKENSELDLSNFQDDLDFENSIS 154
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -2
Query: 321 KSNSSSLGVSMSCRALLMRLSTSARILSRSGSRTIGALPSK 199
KS+SSS S + STS+R S S S ++ +L SK
Sbjct: 407 KSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSK 447
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 607 SPGDALFCAFFVILQSTSGAADF 539
SP DAL+CA FV L + G +F
Sbjct: 1094 SPHDALYCAKFVKLLHSLGTPNF 1116
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 26.2 bits (55), Expect = 6.5
Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 9/100 (9%)
Frame = +2
Query: 347 RPLSSALEDDEFNEDITESLKRLRASKKTSRFADDIDFENSVTNLENRMRISDKILE--- 517
+P+S+ + FN D +E + S + D++ + V+ +R+S + +E
Sbjct: 24 QPVSAKPSETAFNSDASEKEQSPTTSNEEEDAISDMEDKEDVSFGSKILRVSHQEVEKPT 83
Query: 518 -SVGIGHSEVSSARRALQDNEE-----RTEKRIARRLEDN 619
S +G L+D EE R E+++ +R N
Sbjct: 84 LSATVGRVSFLKKMPKLEDEEEILAKKREEQKLRKRSRQN 123
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 158 YNKGESYYRPV----LDRLDGKAPIVREPERESIRADVDN 265
Y ++YY + LDR+ + V E +S++ D+DN
Sbjct: 377 YGSADTYYERITQILLDRISSLSESVNEQNIKSLQTDIDN 416
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 8.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -1
Query: 493 HSVFEIGDAVLKVDVVSEPRS 431
HS F +GDAVL+ V PRS
Sbjct: 301 HSAFCLGDAVLRRFVFRSPRS 321
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 385 VKFIVFQGRRERSAALGACTSEVEQFIVG 299
+KFIV+ G R+ +A + + S + I+G
Sbjct: 53 IKFIVWHGSRKHNACIRSVYSIINNMIIG 81
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 425 KKTSRFADDIDFENSVTNLENRMRISDKILES-VGIGHSEVSSARRALQDNEERTEKRIA 601
++ +F DDI S+ + K LE V + + ++ NEER E+
Sbjct: 129 ERLQQFDDDIQKRESLLETYTLLDAQRKDLEEKVLLSQDRKLESEAIIKQNEERNEEMFQ 188
Query: 602 RRLEDNSL 625
+ED L
Sbjct: 189 SLIEDKRL 196
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 25.8 bits (54), Expect = 8.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -1
Query: 385 VKFIVFQGRRERSAALGACTSEVEQFIVG 299
+KFIV+ G R+ +A + S + I+G
Sbjct: 53 IKFIVWHGSRKHNACIRTAYSIINNMIIG 81
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,471,814
Number of Sequences: 5004
Number of extensions: 45736
Number of successful extensions: 167
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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