Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_O04
         (930 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    32   0.13 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   2.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.8  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   3.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.8  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    26   8.7  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = -3

Query: 742  SSLLYKTGVRIIGFVNEVVVFLVNAILSCGFRINEAMLHLCYVNFLQHFHIHKHFRVY 569
            S++L +     I  + + V  +++A++  G   + ++L  C+VN   H   H+  R+Y
Sbjct: 906  STVLSRDDAFSIHVIEQTVKTVISALIRLGKDFDSSLLVSCFVNAFPHIPQHRRLRLY 963


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 275 RYHSLCQFYNIHHQ--CLVGSHLG 210
           +Y++ C FYNI H   C  G  LG
Sbjct: 35  KYYNFCPFYNIQHNYTCQTGDPLG 58


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 188 QKKILSFFQDVSQLNTDDEYYKIGKDY-DIEMNMDNYTNKKAVEEFLKMYRTGFMP 352
           + K+     D + L  DD      KD+ ++ +N  +Y NK  ++ F  + +  F P
Sbjct: 617 EMKLSDKIDDANSLKDDDFIQGSKKDFFEMNLNHSSYQNKDELKPFQLLVKHAFKP 672


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +2

Query: 125 VQYQNRAP*SQKMWMPVFVEK-QKKILSFFQDVSQLNTDDEYYKIG 259
           V+ +N+   ++ M M  FV++ ++++ +F  D S++  D+E  K+G
Sbjct: 267 VESENKGLINEVMDMRNFVQQLEQELYAFEDDYSRIQNDEELLKVG 312


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -1

Query: 930 SPLVXAQSSNEPIIAGRSRSNLSTTLFKG 844
           +PLV ++  NE + A +++S+ S T FKG
Sbjct: 654 APLVSSKKMNENLKAAKNQSSESLTSFKG 682


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 222 LTSWKKDRIFFCFSTNTGIHIF*LYGARFWYCTAERDGYKPSQNQ 88
           L+S+     F+ F T  G +   L+  R WY     D Y+PS  Q
Sbjct: 186 LSSYSPFLWFYFFITIVG-NFIPLFTPRVWYPLFPEDNYQPSAEQ 229


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 200 LSFF--QDVSQLNTDDEYYKIGKDYDIEMNMDN 292
           L+FF  Q+V Q+N +DEY +   + D E  +DN
Sbjct: 49  LNFFSTQNVMQMNFEDEYSEFSNE-DDEAEIDN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,515,552
Number of Sequences: 5004
Number of extensions: 70724
Number of successful extensions: 226
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)