Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_O01
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    38   0.001
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    38   0.001

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +3

Query: 150 RHLTXQXSECAQCGYPAXXXRSYHWSVKA 236
           R    Q S CA CGYPA   RSY+W  KA
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAKA 53



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 86  GTSSXGKRRNKTXT*CXXCGXSSSHM 163
           GT S G R NK+ T C  CG  S H+
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHI 29



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 280 KIVRRRFRNGFKEGKPT 330
           K V R F+NGF+ GKPT
Sbjct: 68  KKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 16/29 (55%), Positives = 17/29 (58%)
 Frame = +3

Query: 150 RHLTXQXSECAQCGYPAXXXRSYHWSVKA 236
           R    Q S CA CGYPA   RSY+W  KA
Sbjct: 25  RSFHIQKSTCACCGYPAAKTRSYNWGAKA 53



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 86  GTSSXGKRRNKTXT*CXXCGXSSSHM 163
           GT S G R NK+ T C  CG  S H+
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHI 29



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 280 KIVRRRFRNGFKEGKPTPPKKAVA 351
           K V R F+NGF+ GKP     A A
Sbjct: 68  KKVHRSFKNGFRSGKPAAAVAASA 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,771
Number of Sequences: 5004
Number of extensions: 17286
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)