Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_N07
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 557 PPPPPXXXXXXPPPXXXGGFFFXFXXPPP 643
           PPPPP       PP   G        PPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/72 (23%), Positives = 17/72 (23%)
 Frame = -1

Query: 762 PPPPPXXXXXQXXXXXXXXXKXKXXXXXXPPPPXXFFXXXGGGXXXKKKKPPXXXGGGXX 583
           PPPPP                        PPPP       G G       PP    GG  
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791

Query: 582 XXXXGGGGGPPP 547
                    P P
Sbjct: 792 YYAPAPQAEPEP 803



 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 563 GGAPPPPXXXXXXXXXXXXPPPP 495
           GG PPPP            PPPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 557 PPPPPXXXXXXPPPXXXGGFFFXFXXPPPXXXKXXXGG 670
           PPP P      PPP   G        PPP       GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,365
Number of Sequences: 5004
Number of extensions: 23882
Number of successful extensions: 72
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)