Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_N05
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac...    27   3.6  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    27   4.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   6.3  

>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
 Frame = +3

Query: 621 IGTSHHMFLTTYIRYPYISLAHETKKNTAAKKTL-DLFTPMKTPRLNI*RTISVYLLVLE 797
           + T+++ FL T I +  I+++H +  ++  +  L +L T  +T  L++  T S+ LLV +
Sbjct: 205 LDTAYYGFLMTVIAF--IAVSHCSVGHSELQSFLQELLTEEETTPLHLDITRSLSLLVRQ 262

Query: 798 HYLD 809
            YLD
Sbjct: 263 GYLD 266


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 464 HCQIEYVIKVHSLFSPLFFGNIRKNIC 384
           HCQ+  ++     F  L FGN++ N+C
Sbjct: 118 HCQVAEILA----FEKLVFGNLKPNVC 140


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 692 KKKYCSEENS*SLY--PDENTPVEYLKDYI 775
           KKK   +E     Y  P+ENTP ++ K YI
Sbjct: 363 KKKTLKKEGKLDKYGRPNENTPADWSKSYI 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,605,048
Number of Sequences: 5004
Number of extensions: 79846
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)