Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_N04
         (909 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical p...   222   3e-58
Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRN...    31   1.1  
Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical pr...    31   1.5  

>Z99281-11|CAB16517.1|  154|Caenorhabditis elegans Hypothetical
           protein Y57G11C.16 protein.
          Length = 154

 Score =  222 bits (542), Expect = 3e-58
 Identities = 98/135 (72%), Positives = 119/135 (88%)
 Frame = +2

Query: 101 MSLVIPDKFQHILRIMNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECT 280
           MSL+IP+KFQHI R+MNTNIDG RKV +A+TAIKGVGRR++ +  +KAD+D++KRAGE T
Sbjct: 1   MSLIIPEKFQHIHRVMNTNIDGNRKVPYALTAIKGVGRRFAFVCCRKADVDVNKRAGELT 60

Query: 281 EEEVEKIITIMSNPRQYKIPDWFLNRQKDIVDGKYSQLTSSNLDSKLREDLERLKKIRAH 460
           EE+ +KI+TIM NP QYKIP+WFLNRQKDI DGK  QL S+ +D+KLREDLER+KKIR H
Sbjct: 61  EEDFDKIVTIMQNPSQYKIPNWFLNRQKDIKDGKTGQLLSTAVDNKLREDLERMKKIRLH 120

Query: 461 RGMRHYWGLRVRGQH 505
           RG+RHYWGLRVRGQH
Sbjct: 121 RGLRHYWGLRVRGQH 135


>Z81038-5|CAB02766.3|  970|Caenorhabditis elegans Hypothetical
           protein C25A1.7 protein.
          Length = 970

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 FMIRRIC*NLSGMTSDILVKFLTNVPKHNXRGNEKQILRIPYSEM 16
           F + R+  NL+ + S IL    + V +H    +EKQILR+ + ++
Sbjct: 811 FTLHRLAHNLAHIISPILPHLSSEVLQHLPGSHEKQILRLKFEDL 855


>AB096631-1|BAC76731.1|  972|Caenorhabditis elegans isoleucyl-tRNA
           synthetase (mitochondrial)protein.
          Length = 972

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 150 FMIRRIC*NLSGMTSDILVKFLTNVPKHNXRGNEKQILRIPYSEM 16
           F + R+  NL+ + S IL    + V +H    +EKQILR+ + ++
Sbjct: 811 FTLHRLAHNLAHIISPILPHLSSEVLQHLPGSHEKQILRLKFEDL 855


>Z81457-5|CAB03817.2|  584|Caenorhabditis elegans Hypothetical
           protein C01G12.7 protein.
          Length = 584

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 423 VKIWRGSRRFALTEGCDITGAFVCVVSTLRLLAGEEELLVYQRRS 557
           +K +R   + AL     +TGA + + +TL LLA    LL  QR S
Sbjct: 137 IKKYRWGMKMALLFHLCVTGALLSITNTLHLLASGYHLLKRQRNS 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,157,350
Number of Sequences: 27780
Number of extensions: 306161
Number of successful extensions: 846
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)