Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_N03
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   312   2e-85
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL032634-2|CAC35855.1|  276|Caenorhabditis elegans Hypothetical ...    30   2.5  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   4.4  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   4.4  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    28   7.7  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    28   7.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   7.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  312 bits (767), Expect = 2e-85
 Identities = 145/220 (65%), Positives = 172/220 (78%)
 Frame = +1

Query: 82  RXPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 261
           R PKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 262 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 441
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 442 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 621
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 622 ITGGRNLGRVGTIVXRERHPGSFDIVHIKDSTGHTFATKV 741
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FAT++
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRI 221



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = +2

Query: 740 LNNVFIIGKGTXAYISLPRGKGIRLTIAXERDKRIAXK 853
           ++NVF+IGKG  A +SLP G GIRL+IA ERDKR+A K
Sbjct: 221 ISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 394 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 525
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL032634-2|CAC35855.1|  276|Caenorhabditis elegans Hypothetical
           protein Y39G8C.2 protein.
          Length = 276

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +1

Query: 643 GRVGTIVXRERHPGSFDIVH-IKDS-TGHTFATKVEQRVHNRQ 765
           G+   +V R    G F  V+ +KD+ T  TFA KVEQ++  R+
Sbjct: 20  GKANYVVSRLLGEGGFGAVYLVKDTKTNKTFAMKVEQKMEKRK 62


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 612 LVYDHGRP*LGACGHHRVPRETSRLLRH 695
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 612 LVYDHGRP*LGACGHHRVPRETSRLLRH 695
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 510 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 593
           HH    PTY    F+P  H++Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
 Frame = +3

Query: 510 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 686
           HH      +  +  H P  H ++ ++G H          HG     A  HH    E    
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHG-------HHGSHHSPA--HHGHHGEHHHA 512

Query: 687 LRHCAHQGLHGTHLRHEG 740
             H  H G HGTH  H G
Sbjct: 513 PAHHGHHGEHGTHHGHHG 530


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
            protein C47D12.8 protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 789  SEMYAFVPLPIMNTLFNLRGEGVSRGVLDVHNVEGAGMSLAXHDGAHTPQVTASRDHTQV 610
            SE+    P P ++   +L+ + V     ++ + E +  + A       P  T  R  TQ+
Sbjct: 820  SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879

Query: 609  PRLKLDEVHNL 577
              +K  E HNL
Sbjct: 880  FGIKASEAHNL 890


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
            protein C47D12.8 protein.
          Length = 935

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/71 (25%), Positives = 31/71 (43%)
 Frame = -3

Query: 789  SEMYAFVPLPIMNTLFNLRGEGVSRGVLDVHNVEGAGMSLAXHDGAHTPQVTASRDHTQV 610
            SE+    P P ++   +L+ + V     ++ + E +  + A       P  T  R  TQ+
Sbjct: 820  SELKLSAPEPDVDRAISLKADQVECSSQELTDSEASTSTKAKKGKKWKPNPTVIRTLTQI 879

Query: 609  PRLKLDEVHNL 577
              +K  E HNL
Sbjct: 880  FGIKASEAHNL 890


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 551  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 387
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,748,169
Number of Sequences: 27780
Number of extensions: 436666
Number of successful extensions: 1239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)