Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_M22
         (1007 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.34 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.34
 Identities = 18/61 (29%), Positives = 19/61 (31%)
 Frame = +2

Query: 818  PPPXPXXXGXFXXXGAXXXXXXEXXXPPPXXXTPPGAXXAXPAPPQXXXXPPHXPPXREX 997
            PPP P                     PPP       A  + P PPQ    PP  PP R  
Sbjct: 311  PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP-PPPPRSA 369

Query: 998  P 1000
            P
Sbjct: 370  P 370


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 14/42 (33%), Positives = 16/42 (38%)
 Frame = +1

Query: 478  PXPXXPPXKXXRGPPXPPLHXXG*XAPPQXTPXXXANXGPHP 603
            P P  PP      P  PP+      APP   P   A   P+P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 15/43 (34%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
 Frame = +1

Query: 472 PNPXPXXPPXKXXRG--PPXPPLHXXG*XAPPQXTPXXXANXG 594
           P P P  PP     G  PP PP    G   PP   P    + G
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,764
Number of Sequences: 5004
Number of extensions: 31249
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)