Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_M18
(899 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical pr... 32 0.64
AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical ... 31 1.5
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p... 29 6.0
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein. 29 6.0
Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical pr... 28 7.9
X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit ... 28 7.9
U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha nicot... 28 7.9
U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical pr... 28 7.9
>L10990-8|AAB59173.2| 223|Caenorhabditis elegans Hypothetical
protein C30A5.3 protein.
Length = 223
Score = 31.9 bits (69), Expect = 0.64
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 611 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 733
Y+ R+F +E ALL + +P+TC + E W FL A
Sbjct: 71 YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111
>AF024502-6|AAB70378.4| 402|Caenorhabditis elegans Hypothetical
protein M151.1 protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = -2
Query: 832 YRIRRSGRAERGVXAHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQES 653
+R RR + H AW+ R P ++ + K ++ K E + G G+E+
Sbjct: 81 FRYRRMVFGAKDQLKHDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQ 140
Query: 652 ARGSFQGETPGIF 614
+G+T F
Sbjct: 141 NYSKRRGQTRNSF 153
>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
T04A8.14 protein.
Length = 1521
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 790 HXPPVQPDRCALSG-NYRLESNPVXPTYPP 876
H PP++ R A+ YR+ + P P YPP
Sbjct: 1486 HEPPIELRRSAIPAPQYRVGAPPAAPYYPP 1515
>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
protein T04A8.14 protein.
Length = 1521
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 790 HXPPVQPDRCALSG-NYRLESNPVXPTYPP 876
H PP++ R A+ YR+ + P P YPP
Sbjct: 1486 HEPPIELRRSAIPAPQYRVGAPPAAPYYPP 1515
>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
Length = 1521
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +1
Query: 790 HXPPVQPDRCALSG-NYRLESNPVXPTYPP 876
H PP++ R A+ YR+ + P P YPP
Sbjct: 1486 HEPPIELRRSAIPAPQYRVGAPPAAPYYPP 1515
>Z80220-5|CAB02308.1| 493|Caenorhabditis elegans Hypothetical
protein T08G11.5 protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 480 SHVLSCVIXLILWITVLPPLSELIPLAA 397
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>X83888-1|CAA58765.1| 493|Caenorhabditis elegans beta-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 480 SHVLSCVIXLILWITVLPPLSELIPLAA 397
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>U81144-1|AAB39358.1| 493|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit precursor
protein.
Length = 493
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 480 SHVLSCVIXLILWITVLPPLSELIPLAA 397
S +LS V+ L+L +LPP S IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294
>U41033-6|AAA82378.1| 859|Caenorhabditis elegans Hypothetical protein
K09E3.7 protein.
Length = 859
Score = 28.3 bits (60), Expect = 7.9
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 2/143 (1%)
Frame = +2
Query: 431 NTVIHRIRXITQERTCEQKASKRPGTVKRPRCWRFSIGYAPLTSITKIDAQVRGGETRQD 610
N++ +R I Q+RT KR R + G + + Q+RG + +
Sbjct: 708 NSLTLFLRAIEQQRTVPASTLKREACFDRVDGLSYKRGNFTING--PLPTQLRG--SNME 763
Query: 611 YKDTRRFPL--EAPSCALLFRPCRLPDTCPPFSLREAWRFLIAHAVXISVRCRSFAPSWA 784
K +R FP+ + P+ L F P +P PP + + IS RS P
Sbjct: 764 AKQSR-FPVWNQHPTMPLSFTPQPVPSMIPPV--------ITPNPSMIS---RSTMP--L 809
Query: 785 VCTNPPFSPTAAPYPVTIVLSPT 853
+ + P PTAAP + + SPT
Sbjct: 810 IMSYPNILPTAAPGAIAQINSPT 832
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,116,871
Number of Sequences: 27780
Number of extensions: 404837
Number of successful extensions: 1098
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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