Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_M16
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0906 - 7124686-7124730,7124854-7124925,7125257-7125383,712...   157   1e-38
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...   151   7e-37
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352...    31   1.6  
03_01_0289 + 2242584-2242931,2242973-2243005,2244158-2244241,224...    29   3.8  
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526...    29   6.7  
08_01_0378 + 3360215-3360253,3360326-3360437,3362176-3362213,336...    28   8.8  

>01_01_0906 -
           7124686-7124730,7124854-7124925,7125257-7125383,
           7125424-7125572,7126126-7126465,7126759-7127090,
           7127327-7127860
          Length = 532

 Score =  157 bits (380), Expect = 1e-38
 Identities = 77/172 (44%), Positives = 110/172 (63%), Gaps = 6/172 (3%)
 Frame = +2

Query: 305 FRNMINEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYR 484
           +R++ ++ V YEI  +YE  F  L+++ F + PWP  + VSP  D D+VF++LY+EL+YR
Sbjct: 34  YRHVRDKNV-YEIHQMYEGGFQRLSDRLFRDAPWPAAEAVSPYCDGDHVFLLLYRELWYR 92

Query: 485 DIYARVPGGPKPE------QRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELIDEFVYQ 646
             YAR              QR  S+ NYCDLF+ +L    V ++LP+QWLW+++DEFVYQ
Sbjct: 93  HAYARASSSSSSSAPLTAGQRAESWANYCDLFSVVLHGV-VNMQLPNQWLWDMVDEFVYQ 151

Query: 647 FQSFAQYRSRTTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 802
           FQSF QYR++    S  E+  L   +KAWNV  +LN L +LV+KS I + LE
Sbjct: 152 FQSFCQYRAKLKNKSDDELHQLKQFDKAWNVYGVLNYLQALVEKSMIAQILE 203


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score =  151 bits (366), Expect = 7e-37
 Identities = 72/162 (44%), Positives = 106/162 (65%)
 Frame = +2

Query: 317 INEGVTYEILNLYENTFPTLTEKYFENTPWPDEDEVSPIVDNDNVFMILYKELYYRDIYA 496
           I +   YE   +YE  F  L++++F +TPWP  + V+   D D+VF++LY+EL++R  +A
Sbjct: 24  IRDRNVYETHQMYEGGFTRLSDRHFRDTPWPPAEAVAAHCDGDHVFLLLYRELWFRHAHA 83

Query: 497 RVPGGPKPEQRFHSFYNYCDLFNYILSVTPVPLELPDQWLWELIDEFVYQFQSFAQYRSR 676
           RV G   P QR  S+ NYC LF+ +L    V ++LP+QWLW+++DEFVYQFQSF QYR++
Sbjct: 84  RVQG-LTPAQRAESWDNYCSLFSVVLQGV-VNMQLPNQWLWDMVDEFVYQFQSFCQYRAK 141

Query: 677 TTKLSPAEIEALNTENKAWNVLCILNVLHSLVDKSNIKRQLE 802
               +  EI  L   ++AW+V  +LN L +LV+KS I   LE
Sbjct: 142 LKNKTHEEIALLKQYDQAWSVYGVLNYLKALVEKSMIGEILE 183


>07_01_0467 -
           3524598-3524837,3524939-3525466,3526242-3526892,
           3527015-3527500,3527580-3527792,3527885-3528174,
           3528276-3528418,3528633-3528855,3528983-3529160,
           3529598-3529867
          Length = 1073

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +2

Query: 188 EVTNPMATMKHSPQNTTSRNMTGLLIIKCLTWSRNSLXYFRNMINEG 328
           EV + +A +K S  +   RN+ GL  +   TW RN L   R +++ G
Sbjct: 39  EVESALALLKKSGGSIDGRNVFGLCALHLATW-RNHLPIVRRLLDAG 84


>03_01_0289 +
           2242584-2242931,2242973-2243005,2244158-2244241,
           2244640-2245782
          Length = 535

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = -1

Query: 283 PCQAFYNKKT-----CHIPARSVLWTVLHSRHRIRNLPHYNRR 170
           PC AF+ K T     CH   ++  WT +    + +NLP  NRR
Sbjct: 166 PC-AFWGKGTEPTDHCHATDKNAKWTKMRQSLKRKNLPSSNRR 207


>04_03_0941 -
           20950190-20951088,20952436-20952478,20952580-20952606,
           20953189-20953301,20953872-20954715,20955740-20955790,
           20956026-20956126,20956205-20956244,20956360-20957124
          Length = 960

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 154 TTMYSSDDYNEGG---YESYGDYEAQSTEHYEPEYDRS 258
           +T  S   YN+ G   Y S G Y   ST++YE  Y++S
Sbjct: 880 STDNSESGYNKSGTGEYGSGGGYNKSSTDNYESGYNKS 917


>08_01_0378 +
           3360215-3360253,3360326-3360437,3362176-3362213,
           3363949-3363966,3364629-3364847,3364937-3366727,
           3367764-3367827,3367915-3367975,3368685-3368694
          Length = 783

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = +2

Query: 161 CIPATIIMREVTNPMATMKHSPQNTTSRNMTGLLIIKCLTWSRNSLXYFRNMINEGVTYE 340
           C+ +    REV N  AT+ +   N+T++ M G   ++ LT+ +      + +  +G   E
Sbjct: 107 CLSSETSTREVQNDKATISNMTNNSTAQ-MAGDAALEKLTYIQK--LQRKEISEKGSCSE 163

Query: 341 ILNLY 355
           +LNL+
Sbjct: 164 VLNLF 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,505,345
Number of Sequences: 37544
Number of extensions: 483499
Number of successful extensions: 1268
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1265
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)