Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_M12
         (897 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899...    33   0.41 
01_01_0166 + 1412918-1413309,1413845-1414006,1414534-1414720,141...    30   2.9  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    28   8.8  
03_04_0220 - 18741485-18741915,18742007-18742190                       28   8.8  

>02_04_0628 +
           24589313-24589472,24589604-24589765,24589850-24589983,
           24590108-24590275,24590481-24590562,24590734-24591512
          Length = 494

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 579 RLVFCDQIPS--RPYRRLRCGCSYQDPTHRSPR 487
           R++ CD  PS  R   RL C CSYQ    +SPR
Sbjct: 29  RILLCDSDPSSSREVLRLLCNCSYQVTCAKSPR 61


>01_01_0166 +
           1412918-1413309,1413845-1414006,1414534-1414720,
           1415221-1415646,1416028-1416036,1416361-1416768,
           1417397-1417654
          Length = 613

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 582 RRLVFCDQIPSRPYRRLRCGCSYQDPTHRSPRLSFQICLR 463
           +R++ CD  P+RP+R + CG  +    +  P   F+  +R
Sbjct: 146 KRVLSCDFKPTRPFRIVTCGEDFLANYYEGPPFKFKHSIR 185


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
 Frame = +3

Query: 357 TAPGXLGPGGDSTNYGG----------RLDWANKNAQAAIDINRQIGGRSGMTASGSGVW 506
           T+ G  G GG+   +GG           L   ++ A+ ++++  Q+GG  G+ ++G G  
Sbjct: 103 TSAGEFGGGGEVRVWGGGNRSGEAAFISLQSGSRVAKRSMELGVQMGGEMGLGSNGGG-- 160

Query: 507 DLDKNTHISAGGMVSKEFGHRRPD 578
                    AGG V  E  HR  D
Sbjct: 161 --------GAGGQVHDEMPHRNVD 176


>03_04_0220 - 18741485-18741915,18742007-18742190
          Length = 204

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 487 PRAPVCGI-LIRTPTSQPAVWSRRNLVTEDQTSVFKQRSGMSGDCQHNPII 636
           P AP C + L  +P S PAV  R+  +     S+    SG +   + +P++
Sbjct: 149 PEAPSCDLGLCLSPGSPPAVGERKPALRPGTPSMSSDESGTTTGGERDPVL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,936,058
Number of Sequences: 37544
Number of extensions: 543268
Number of successful extensions: 1280
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)