Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_M05
         (951 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    27   2.9  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    26   9.0  

>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/57 (24%), Positives = 29/57 (50%)
 Frame = +1

Query: 157  MSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKEIFEKKKSKWD*NYRICKNCK 327
            +++G     L+LG   + R   +S+GY   + +  K++  + K ++D N+     CK
Sbjct: 898  LTVGSDAVCLSLGDSQFHRLSCDSVGYNIEVKRYVKKVSGQGKMRYDYNFWSKNECK 954


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 94  RSTTAFRVVNFELYAKPNI-VIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKDGKEI 270
           R    +RV N E+Y +PN  V+  +G   +G+         +  E++      +   K I
Sbjct: 3   RRHRVYRVFNQEMYVEPNFKVVKELGQGAYGIVCAARNVASKDQEAVAIKKITNVFSKSI 62

Query: 271 FEKK 282
             K+
Sbjct: 63  LTKR 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,319,445
Number of Sequences: 5004
Number of extensions: 32867
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)