Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_M04
(892 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0668 - 4882174-4884204 174 9e-44
07_01_0075 - 558829-560859 171 8e-43
02_04_0398 - 22598895-22599100,22599865-22599943 29 3.8
08_01_0387 - 3426058-3426168,3426279-3426473,3426612-3426724,342... 28 8.7
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 28 8.7
>06_01_0668 - 4882174-4884204
Length = 676
Score = 174 bits (423), Expect = 9e-44
Identities = 102/234 (43%), Positives = 127/234 (54%), Gaps = 3/234 (1%)
Frame = +3
Query: 132 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 311
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYSISRIRQFYMRKVKYTQSNFYE 60
Query: 312 RLSRIIQEFPKLDDVHPFYADLMNVLYDKGSLXTWTRTAEHXQTSY*QCCKDYVRLVKYX 491
+LS +I +FP+LDD+HPFY DL++VLY+K + + KDY+RL+KY
Sbjct: 61 KLSTVIDDFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 492 DSLYPCNS*NVXLXVXXALS*NXXGPIXPSWNXXVXI-XHVYRR*XPTPGR*SSV--GXP 662
DSLY C V I PS I H+ R P + + G P
Sbjct: 121 DSLYRCKCLKVAALGRMC---TVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYP 177
Query: 663 TFGKPVXXXXXXXXXXEMXPFAFTXKXLDXGPPDYXXLGMGGEKPPGXPDSPWE 824
GK ++ P+AFT K L G DY L PG D P+E
Sbjct: 178 NVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGILDRPFE 231
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +2
Query: 515 LKRAALGXXGPIMKXAXAYXTFLEXVRXHLXRLPAIDXYXRTIIICXXPNVRKTSFIXKK 694
LK AALG ++K +LE +R H+ RLP+ID RT++IC PNV K+SF+ K
Sbjct: 129 LKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVGKSSFMNKI 188
Query: 695 TXSD 706
T +D
Sbjct: 189 TRAD 192
>07_01_0075 - 558829-560859
Length = 676
Score = 171 bits (415), Expect = 8e-43
Identities = 101/234 (43%), Positives = 126/234 (53%), Gaps = 3/234 (1%)
Frame = +3
Query: 132 MSLYNFKKIAVVPTAKDFIDIILSKTQRKTPTVVHKHYKISRIRGFYIRKVKYTQQNFHD 311
M YNFK+I VVP KDFIDIILS+TQR+TPTVVHK Y ISRIR FY+RKVKYTQ NF++
Sbjct: 1 MVQYNFKRITVVPPGKDFIDIILSRTQRQTPTVVHKGYAISRIRQFYMRKVKYTQSNFYE 60
Query: 312 RLSRIIQEFPKLDDVHPFYADLMNVLYDKGSLXTWTRTAEHXQTSY*QCCKDYVRLVKYX 491
+LS +I +FP+LD +HPFY DL++VLY+K + + KDY+RL+KY
Sbjct: 61 KLSTVIDDFPRLDGIHPFYGDLLHVLYNKDHYKLALGQINTARNIIAKIAKDYLRLLKYG 120
Query: 492 DSLYPCNS*NVXLXVXXALS*NXXGPIXPSWNXXVXI-XHVYRR*XPTPGR*SSV--GXP 662
DSLY C V I PS I H+ R P + + G P
Sbjct: 121 DSLYRCKCLKVAALGRMC---TVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYP 177
Query: 663 TFGKPVXXXXXXXXXXEMXPFAFTXKXLDXGPPDYXXLGMGGEKPPGXPDSPWE 824
GK ++ P+AFT K L G DY L PG D P+E
Sbjct: 178 NVGKSSFMNKITRADVDVQPYAFTTKSLFVGHADYKYLRYQVIDTPGILDRPFE 231
Score = 60.1 bits (139), Expect = 2e-09
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +2
Query: 515 LKRAALGXXGPIMKXAXAYXTFLEXVRXHLXRLPAIDXYXRTIIICXXPNVRKTSFIXKK 694
LK AALG ++K +LE +R H+ RLP+ID RT++IC PNV K+SF+ K
Sbjct: 129 LKVAALGRMCTVIKRISPSLAYLEQIRQHMARLPSIDPNTRTLLICGYPNVGKSSFMNKI 188
Query: 695 TXSD 706
T +D
Sbjct: 189 TRAD 192
>02_04_0398 - 22598895-22599100,22599865-22599943
Length = 94
Score = 29.5 bits (63), Expect = 3.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 753 GPPDYXXLGMGGEKPPGXPDSPWEKP 830
GPP Y PG PD PW++P
Sbjct: 35 GPPGYGHYPPWNGGYPGRPDRPWDRP 60
>08_01_0387 -
3426058-3426168,3426279-3426473,3426612-3426724,
3427121-3427157,3427270-3427341,3427849-3427962,
3428129-3428200,3428343-3428381,3429340-3429414,
3429561-3429674,3429749-3429813,3429927-3430047,
3430942-3431063,3431547-3431634
Length = 445
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 147 FKKIAVVPTAKDFIDIILSKTQRKTPTV-VHKHYKISRIRGFYIRKVKYTQQNFHDRLSR 323
F++I +V A D + K++ PT + K R +G +++ + L
Sbjct: 83 FQRIPMVMPATDILMSAQRKSRNVPPTKGIANIAKRERNKG--AKQLDALMKEISVPLRT 140
Query: 324 IIQEFPKLDDVHPFYADLMNVLYDKG 401
+ FPK D+HP+ L+ + + +G
Sbjct: 141 YTENFPKRRDLHPYERSLIELTFGEG 166
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 288 YTQQNFHDRLSRI-IQEFPKLDDVHPFYADLMNVLYDKGS 404
+T +NF +RI +Q F L D H + ADL ++ KGS
Sbjct: 388 WTSKNFSHYKARIALQNFDVLLDDHDYCADLWSLAPSKGS 427
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,454,867
Number of Sequences: 37544
Number of extensions: 357303
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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