Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_M03
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   5.1  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 246 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQCHQS 353
           QC  C+K     ++   +RR   + +P  C  C ++
Sbjct: 121 QCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERA 156



 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 246 QCSSCAKYCRPSDSSFENRRRAARSKPKVCSQC 344
           +C+ C+K    S     + R     KP VC  C
Sbjct: 177 KCTVCSKTFIQSGQLVIHMRTHTGEKPYVCKAC 209


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = -3

Query: 283 SDGLQYLAHEEHCHLDTA---IAVPGQLVALYVLSGAVLAV--ACRSAG*TSGTK-PEQR 122
           + G+QYLA   + H D A   + V   LV      G    +  A   A  T G K P + 
Sbjct: 745 ASGMQYLAEMNYVHRDLAARNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRW 804

Query: 121 TAPE 110
           TAPE
Sbjct: 805 TAPE 808


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,300
Number of Sequences: 438
Number of extensions: 5473
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)