Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP21_F_M01
(944 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.011
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 35 0.019
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.044
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.72
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 29 1.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.7
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 26 6.7
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 35.5 bits (78), Expect = 0.011
Identities = 29/87 (33%), Positives = 31/87 (35%), Gaps = 1/87 (1%)
Frame = +3
Query: 684 PPXPX-EXXPFXRXXLXRKXPPXXXHPXXGXPRPIQXPPXPXESPPPXQXXAPXPQXXPX 860
PP P E P PP P P P + PP P PPP Q AP + P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPS--PASAPPIPSKAPPIPSSLPPPAQPAAPV-KSPPS 186
Query: 861 DGXRXXAPPPXPXDXPXXXXPXRPPPP 941
A PP P P PPPP
Sbjct: 187 APSLPSAVPPMP--------PKVPPPP 205
Score = 26.6 bits (56), Expect = 5.1
Identities = 21/76 (27%), Positives = 25/76 (32%)
Frame = +3
Query: 612 SSPPXXSEXXPHXSPTXXXXWIXGPPXPXEXXPFXRXXLXRKXPPXXXHPXXGXPRPIQX 791
S+PP S P + PP P P + K PP P
Sbjct: 142 SAPPRPSIPPPSPASAPPIP-SKAPPIPSSLPPPAQPAAPVKSPPS------APSLPSAV 194
Query: 792 PPXPXESPPPXQXXAP 839
PP P + PPP AP
Sbjct: 195 PPMPPKVPPPPLSQAP 210
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.7 bits (76), Expect = 0.019
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +3
Query: 780 PIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXXPXRPPPP 941
P+ PP +S P Q AP P P PPP P PPPP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMS-----VPPPPSAPPMPAGPPSAPPPP 1734
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/55 (27%), Positives = 18/55 (32%)
Frame = +3
Query: 774 PRPIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXXPXRPPP 938
P+ P +PPP P P P + PP P P P P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP--LPASSAPSVPNP 1746
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.5 bits (73), Expect = 0.044
Identities = 17/50 (34%), Positives = 17/50 (34%)
Frame = +3
Query: 792 PPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXXPXRPPPP 941
PP P P AP P P PPP P P PPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 31.1 bits (67), Expect = 0.24
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +3
Query: 726 LXRKXPPXXXHPXXGXPRPIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDX 905
L K PP P P P P P PPP P P G PPP P
Sbjct: 727 LLLKSPPPPP-PAVIVPTPA---PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Query: 906 P 908
P
Sbjct: 783 P 783
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/75 (29%), Positives = 23/75 (30%)
Frame = +3
Query: 684 PPXPXEXXPFXRXXLXRKXPPXXXHPXXGXPRPIQXPPXPXESPPPXQXXAPXPQXXPXD 863
PP P P PP P G P P PP + PP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA---PIMGGPPPPPPPPGVAGAGPPPPP--PPPPAVSAG 788
Query: 864 GXRXXAPPPXPXDXP 908
G R AP P P
Sbjct: 789 GSRYYAPAPQAEPEP 803
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/56 (30%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +3
Query: 783 IQXPPXPXESPPPXQXXAPXPQXXPXD---GXRXXAPPPXPXDXPXXXXPXRPPPP 941
++ PP P PP P P P PPP P P PPPP
Sbjct: 729 LKSPPPP---PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.72
Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Frame = +3
Query: 741 PPXXXHPXXGXPRPIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXA-PPPXPXDXPXXX 917
PP + P P Q P PPP + Q P R + PP P P
Sbjct: 341 PPPRSNAAGSIPLPPQGRSAPPP-PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
Query: 918 XPXRPP 935
P PP
Sbjct: 400 APALPP 405
Score = 28.3 bits (60), Expect = 1.7
Identities = 20/66 (30%), Positives = 23/66 (34%)
Frame = +3
Query: 741 PPXXXHPXXGXPRPIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXX 920
PP P I PP +PPP P P+ P G + PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPP-----PPPRSAPSTGRQ---PPPLSSSRAVSN- 387
Query: 921 PXRPPP 938
P PPP
Sbjct: 388 PPAPPP 393
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 884 PTXPXRPPTXXXTXPPAXPP 943
PT P PP+ + PP+ PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPP 437
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.7 bits (61), Expect = 1.3
Identities = 15/47 (31%), Positives = 17/47 (36%)
Frame = +3
Query: 792 PPXPXESPPPXQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXXPXRP 932
PP +SPP P Q R APPP + P RP
Sbjct: 442 PPVAQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRP 488
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/99 (22%), Positives = 24/99 (24%)
Frame = +3
Query: 642 PHXSPTXXXXWIXGPPXPXEXXPFXRXXLXRKXPPXXXHPXXGXPRPIQXPPXPXESPPP 821
P P + PP P PP P P+ P P
Sbjct: 1088 PSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSV 1147
Query: 822 XQXXAPXPQXXPXDGXRXXAPPPXPXDXPXXXXPXRPPP 938
P P P A PP P P P P P
Sbjct: 1148 AAPPVPAPSGAPPVPKPSVAAPPVP--APSSGIPPVPKP 1184
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/57 (29%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Frame = +3
Query: 774 PRPIQXPPXPXESPPPXQXXAPXPQXXPXDGXRXXAPP-PXPXDXPXXXXPXRPPPP 941
P P PP P S AP P PP P P + P P PP
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.2 bits (55), Expect = 6.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 885 PPXPXDXPXXXXPXRPPPP 941
PP P P P +PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,094
Number of Sequences: 5004
Number of extensions: 23951
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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