Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L24
         (932 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   163   2e-40

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  163 bits (396), Expect = 2e-40
 Identities = 75/87 (86%), Positives = 80/87 (91%)
 Frame = +1

Query: 214 IKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 393
           I+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+DG FIYFEDNAGV
Sbjct: 45  IRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGV 104

Query: 394 IVNNKGEMKGSAITGPVAKECADLWPR 474
           IVNNKGEMKGSAITGPVAKECADLWPR
Sbjct: 105 IVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 39.9 bits (89), Expect = 0.003
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +2

Query: 77  MSKRXRGGSCGSEIPYLPGXSQXGAVINCADNTGCK 184
           MSKR RGG+ G++     G    GAV+NCADNTG K
Sbjct: 1   MSKRGRGGASGAKFRISLGLP-VGAVMNCADNTGAK 35



 Score = 37.5 bits (83), Expect = 0.014
 Identities = 21/36 (58%), Positives = 25/36 (69%)
 Frame = +3

Query: 105 AGAKFRISLGSPXWEQ*STAPTTQGAKNLYVIAVQG 212
           +GAKFRISLG P     + A  T GAKNL+VI+V G
Sbjct: 10  SGAKFRISLGLPVGAVMNCADNT-GAKNLFVISVYG 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,141,571
Number of Sequences: 27780
Number of extensions: 281698
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)