Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L21
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    88   1e-19
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    25   0.71 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   5.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   6.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   6.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 87.8 bits (208), Expect = 1e-19
 Identities = 55/202 (27%), Positives = 106/202 (52%), Gaps = 9/202 (4%)
 Frame = +2

Query: 80  ESWKGKIVLITGAASGIGEGVVRLMLERGVKHVAVLDVAEDSGRALENELNTKYGPNSVK 259
           ++W  ++ L+TGA SGIG+ ++  ++ +G+K + +     D  + L  EL +K  P  + 
Sbjct: 3   QNWIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQV-DKMKTLVEELKSK--PGKLV 59

Query: 260 FYKCDVTDEELFLELFDTVKNEQGYLDVVINNAAI------MNDSYKSYKKQIDINVTAL 421
             +CD++++   L++ + V+   G +D++INNA I       ND    +KK  DIN+  L
Sbjct: 60  PLQCDLSNQNDILKVIEWVEKNLGAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGL 119

Query: 422 VTGTLKAIEIMGKQNGGKGGTVLNI---SSVAALCQSHLFPIYFGTKSAVLQFSNCIGLE 592
                + +++M K+ G   G ++NI   S +  L  +   P Y  +K A+   ++C+  E
Sbjct: 120 TCMIQEVLKLM-KKKGINNGIIVNINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSE 178

Query: 593 EHYAKSGVRVLSICFGATDTPL 658
               +S ++V+SI     +T +
Sbjct: 179 LAQCESNIKVISISPDLVETDM 200


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 224 ELNTKYGPNSVKFYKCDVTDEELFLELFDTVKNEQGYLDVVINNAAIMNDS-YKSYKKQI 400
           E   K   N  ++ K   T +E F +  +  ++++  +   ++N  I N++ YK+Y K++
Sbjct: 277 EREQKSYKNEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYNKKL 336

Query: 401 DINV 412
             N+
Sbjct: 337 YYNI 340


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 419 LVTGTLKAIEIMGKQNGGKGGTVLNISSVAAL 514
           +VTG      ++G  NGG GG +   S ++A+
Sbjct: 30  VVTGASGGSIVVGANNGGGGGGLGIASGLSAM 61


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 498 DIFRTVPPLPPFCFPIISIAFSVPVTKAVTF 406
           + F+  PPL  F    +    +V V KAVTF
Sbjct: 413 EAFQEFPPLGRFAVRDMRQTVAVGVIKAVTF 443


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 193 NIQNSNMLDTSLQHKPDNSFADTACGTSDKYNFSF 89
           ++Q +N+L   L H P  S A TA   SDK  F +
Sbjct: 82  SLQVANLL--RLFHIPQISPASTAKALSDKTRFDY 114


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 193 NIQNSNMLDTSLQHKPDNSFADTACGTSDKYNFSF 89
           ++Q +N+L   L H P  S A TA   SDK  F +
Sbjct: 172 SLQVANLL--RLFHIPQISPASTAKALSDKTRFDY 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,965
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)