Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L20
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.34 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   9.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.7  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 14/44 (31%), Positives = 14/44 (31%)
 Frame = +2

Query: 608 PPPPXXXXXXPPPXXXXXXXXXXXKKXPPPPPPXXFFXXXXXPP 739
           PPPP      P P              PPPPPP         PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 29.9 bits (64), Expect = 0.45
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +2

Query: 611 PPPXXXXXXPPPXXXXXXXXXXXKKXPPPPPP 706
           PPP      PPP              PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +2

Query: 608 PPPPXXXXXXPPPXXXXXXXXXXXKKXPPPPP 703
           PPP       PPP              PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
 Frame = +1

Query: 574 KKKKKXFFXGXPPPPXGXXXXPP---PXXXXXXXXXXXXKKXPPPPPXXFFFXXXXPPP 741
           ++++K      PPPP       P   P               PPPPP         PPP
Sbjct: 722 EEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +2

Query: 683 KXPPPPPPXXFFXXXXXPPXXXGGGXPXXXXXXXXPPP 796
           K PPPPPP          P       P        PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/53 (30%), Positives = 16/53 (30%)
 Frame = +1

Query: 637 PPPXXXXXXXXXXXXKKXPPPPPXXFFFXXXXPPPXXXGGXXXXXXXXXXPPP 795
           PPP            KK PPPPP         PP     G          PPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP--IGNGSSNSSLPPPPPPP 343


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = -1

Query: 175 SAHARDRIS*TFGLQNQRRGQPKRKIINFCISIVSFELQV 56
           ++HA   I+ T+   N    +P+  I+N C   + F  ++
Sbjct: 609 ASHAEAEINITYKFDNFSESRPRLNILNNCSFFLPFHFRI 648


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 690 PPPPPPXXFFXXXXXPPXKXGG 755
           PPPPPP  F      PP    G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,264,704
Number of Sequences: 5004
Number of extensions: 40897
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)