Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L17
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    28   1.6  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    27   2.7  

>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 9/32 (28%), Positives = 22/32 (68%)
 Frame = -3

Query: 305 IVSFTVFDFFITIYCLITAISELNAFLPFCGT 210
           ++SF+V    +++YC + A+ E++ ++P  G+
Sbjct: 53  LISFSVLG--VSVYCTMLALGEMSVYMPVAGS 82


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 429 FLQHPDNFYLPLKEMSPSEKYHF*LNV*FVLKYHIEE--AHYLYRVFHCFRFLH 274
           F+Q P+ +YL L+     E +H  +     L Y  E+   H + +V H  R+LH
Sbjct: 199 FIQTPEYYYLVLELADGGELFHQIVR----LTYFSEDLSRHVITQVAHAIRYLH 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,268
Number of Sequences: 5004
Number of extensions: 52963
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)