Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L17
         (895 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0111 + 870781-871017,871194-871240,871681-871947,872196-87...    32   0.54 
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     30   2.2  
10_07_0042 - 12298536-12298589,12298704-12298810,12298850-122988...    29   6.6  
04_04_1224 + 31858110-31858338,31859180-31859301,31859398-318595...    29   6.6  
11_06_0259 - 21757190-21758467                                         28   8.7  
07_03_1188 + 24671022-24672482                                         28   8.7  

>06_01_0111 +
           870781-871017,871194-871240,871681-871947,872196-872848,
           872997-873043,873124-873169,873371-873416,873592-873720,
           873822-873942
          Length = 530

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +3

Query: 303 DTNNVLPQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKE 452
           D   VL +C+TLE+ +R +K ++S M     ++ K  +++ + N +  +E
Sbjct: 464 DIQVVLKRCETLEKEVRSLKLNLSFMNRKDSEQTKQIEELQKQNEDLVEE 513


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 381  ETFPLKEDKNCQDVAEMNSNSEKELGAIVIAN 476
            E FP+KED N  ++A+  S+ +K+ G   I N
Sbjct: 2662 EVFPVKEDANITELAQAGSDIKKKSGQKAIQN 2693


>10_07_0042 -
           12298536-12298589,12298704-12298810,12298850-12298861,
           12299554-12300511
          Length = 376

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 701 QNAVCSLIFVFILRVNKFDPLKDQW*VMPVVPLQ 600
           ++ +C L F        +DPL+D+W  +PV+P Q
Sbjct: 55  EDLLCVLAFEPENMWQLYDPLRDKWITLPVMPSQ 88


>04_04_1224 +
           31858110-31858338,31859180-31859301,31859398-31859507,
           31859661-31859725,31859940-31860004,31860387-31860632,
           31861212-31861313,31861484-31861534,31862015-31862105,
           31862777-31862841
          Length = 381

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 321 PQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAE 428
           P CDT+  +   VK   S +  FPLKE K C    E
Sbjct: 130 PVCDTVAASA-YVKPQTSHVNVFPLKEVKKCSTPGE 164


>11_06_0259 - 21757190-21758467
          Length = 425

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 30  GIP*DLMSSTAYAAEWRSSRPSRRFPHINKS 122
           GIP DL+++ A  + WRS+  S R P  +KS
Sbjct: 24  GIP-DLLNAGAVCSSWRSTYTSLRLPITDKS 53


>07_03_1188 + 24671022-24672482
          Length = 486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 497 FRRKLLKRDEH-GEEAISPSLSESSRATRWEALADIAAELPASLTIDPLTGQIYSLAK 667
           FR  + +R  H  + A++P +   +R   + A+  +  E P++L  D L   + SLA+
Sbjct: 102 FRFLVRRRSLHPSDSALAPVVRHLARRRDFPAVRSLVQEFPSALGHDTLDAYLLSLAR 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,626
Number of Sequences: 37544
Number of extensions: 318067
Number of successful extensions: 728
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)