Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L15
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    26   0.53 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   1.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   2.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  

>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +3

Query: 471 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 605
           ++ YM    Q   +     + M+P C+  ++ C   RK K    E
Sbjct: 28  IDMYMRRKCQECRLKKCLTVGMRPECMVPEYQCAVKRKEKKAQKE 72


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 220 VFGLTLRECTLFYLFIF*LNCIPIN 146
           VF +TLR  TLFY     + C+ I+
Sbjct: 227 VFNITLRRKTLFYTVNLIIPCVGIS 251


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/45 (22%), Positives = 19/45 (42%)
 Frame = +3

Query: 471 LENYMENYMQYKIMSSIK*IRMKPNCLPSKFDCRADRKRKFTHSE 605
           ++ YM    Q   +     + M+P C+  ++ C   RK +    E
Sbjct: 231 IDMYMRRKCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKE 275


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 743 HLFSSGWTS*LPRWQRYNNTTHLIFSRLFNFLDNSES 633
           ++  S  T  L R Q   NTT L  SR ++ LDN+ +
Sbjct: 334 YILKSTLTPKLARKQFQKNTTGLERSRSWSSLDNTNT 370


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 217 FGLTLRECTLFYLFIF*LNCIPIN 146
           F +TLR  TLFY     + C+ I+
Sbjct: 227 FNITLRRKTLFYTVNLIVPCVSIS 250


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -1

Query: 217 FGLTLRECTLFYLFIF*LNCIPI 149
           F +T+R  TLFY     + C+ I
Sbjct: 241 FNITMRRKTLFYTVNLIIPCVGI 263


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,248
Number of Sequences: 438
Number of extensions: 4981
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)