Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L08
         (918 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...   154   1e-38
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...   153   3e-38
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    29   1.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.7  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    26   8.6  

>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score =  154 bits (374), Expect = 1e-38
 Identities = 70/131 (53%), Positives = 94/131 (71%)
 Frame = +2

Query: 80  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 259
           V+VKDV+  K +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 260 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 439
           IY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 440 TTQGRRDLDRI 472
           + QG+RDLDRI
Sbjct: 124 SQQGQRDLDRI 134


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  153 bits (371), Expect = 3e-38
 Identities = 69/131 (52%), Positives = 94/131 (71%)
 Frame = +2

Query: 80  VTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRH 259
           V+VKDV+  + +   AA LK++GK+  P+ +D+VKT   KELAPYDPDW+YVR AAI RH
Sbjct: 4   VSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAIARH 63

Query: 260 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRIL 439
           IY+R  VGV  + K++GG    G+ PSH    SGS+ RK +QSLE + ++EK  +GGR +
Sbjct: 64  IYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSDNGGRRI 123

Query: 440 TTQGRRDLDRI 472
           + QG+RDLDRI
Sbjct: 124 SQQGQRDLDRI 134


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 56  QHKARCVPVTVKDV-EQDKIVKTVAAHLKKTGKVKVPEHMDLVKTA 190
           QH  R VP+  + + E   I K  AA+   T  +K PE +DL+  A
Sbjct: 795 QHGCRAVPLDGRVLCEPTTISKATAANYIMTHLIKNPEELDLILVA 840


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 79  CHSKGCXTRQDC*NCRCSLKKNGQSQGT*AHGSCKDS 189
           C S+ C ++  C +CRC+  +N   + T   G   D+
Sbjct: 408 CRSRSCPSKYQCYSCRCA--RNSSLEFTSLPGQSSDT 442


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 310 TKDLGDSLDSNR*ANVNMTKDGSTTHIEPIRVIRSQL 200
           ++D+G +L+ N+ +N+  TK+ S   I+       QL
Sbjct: 109 SQDVGQNLEDNQISNIGTTKEASNAPIKTTNFAGVQL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,699,181
Number of Sequences: 5004
Number of extensions: 45434
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)