Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L07
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    29   1.2  
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    27   3.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.2  

>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/67 (22%), Positives = 34/67 (50%)
 Frame = +2

Query: 515 SYAKLNISVQLPSHKVHGKTISNWELMEKLRKMIQPESFSLLKVSKHSSEVIRFDAEIEN 694
           +YA +  +V + ++K++   I N ++MEK +  ++ E   L +VS     ++      E 
Sbjct: 41  TYATVREAVHIETNKMYAAKIMNKKMMEKKQDFVKNEIAILKRVSYEHPNILHLVDFFET 100

Query: 695 YSMLKMV 715
            + L ++
Sbjct: 101 VNNLYLI 107


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 535 FCPASLSQGTRQNYIQLGAHGKTAENDPT*EFFIVKS 645
           F P  L+ G   +Y  L  HGK +END    F IV++
Sbjct: 263 FYPTRLATGLTTDYRSL--HGKQSENDDDKGFIIVET 297


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
 Frame = +3

Query: 345  SLFNIFDI-HVIVRLALFIKLY*FLFHRLGFVSHEYSSMQGTLQTLW----RFTCHSVCI 509
            S   I D+   + RLA+      +L      V H  SS +G+  +LW    +F+   + I
Sbjct: 2268 SAHEILDLTEEVNRLAVSTSNSTYLLKSASAVYHNVSSFKGSTPSLWNLLNQFSKFLIEI 2327

Query: 510  *NRMPSLIFLSSFPLTRYTAKLYPIGSSWKN 602
             +   ++++  S+ + R+  KL  +   WKN
Sbjct: 2328 ASANSNIVYKLSYDVIRHFLKLVVL---WKN 2355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,972,645
Number of Sequences: 5004
Number of extensions: 54740
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)