Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP21_F_L07
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      72   5e-13
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    72   5e-13
AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical ...    31   0.83 
Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical pr...    29   3.4  

>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 39/114 (34%), Positives = 66/114 (57%)
 Frame = +2

Query: 470 SDAVALYLPQRLYLKSYAKLNISVQLPSHKVHGKTISNWELMEKLRKMIQPESFSLLKVS 649
           S+A      Q LYLK  A + I+V LP   + G++ISNW+LME+L++ I P      KV 
Sbjct: 14  SEAEDFNKAQHLYLKPMAVIKITVVLPRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVR 73

Query: 650 KHSSEVIRFDAEIENYSMLKMVIMRLDERVVKLNDXPEPLRVKVVKRXRIPFSS 811
           + + + + F+AE+ +  +++  +  LD   +K++   EPL+VK  K  ++ F S
Sbjct: 74  ESNIDSVIFEAELLSLGIMQKTMKILDGFSMKVSGFAEPLKVK-TKEAKLDFPS 126


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 39/114 (34%), Positives = 66/114 (57%)
 Frame = +2

Query: 470 SDAVALYLPQRLYLKSYAKLNISVQLPSHKVHGKTISNWELMEKLRKMIQPESFSLLKVS 649
           S+A      Q LYLK  A + I+V LP   + G++ISNW+LME+L++ I P      KV 
Sbjct: 14  SEAEDFNKAQHLYLKPMAVIKITVVLPRMTIPGQSISNWDLMERLKRAIDPIQMDSCKVR 73

Query: 650 KHSSEVIRFDAEIENYSMLKMVIMRLDERVVKLNDXPEPLRVKVVKRXRIPFSS 811
           + + + + F+AE+ +  +++  +  LD   +K++   EPL+VK  K  ++ F S
Sbjct: 74  ESNIDSVIFEAELLSLGIMQKTMKILDGFSMKVSGFAEPLKVK-TKEAKLDFPS 126


>AC006632-2|AAK85468.1|  478|Caenorhabditis elegans Hypothetical
           protein F28A10.2 protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 23/76 (30%), Positives = 36/76 (47%)
 Frame = +2

Query: 482 ALYLPQRLYLKSYAKLNISVQLPSHKVHGKTISNWELMEKLRKMIQPESFSLLKVSKHSS 661
           +L   Q  + ++   L I VQ    +V    + + +L + L   +  ESFS  K+ + S 
Sbjct: 330 SLIRQQPSFPRTCGTLPIPVQYCICQVDQFNVEDLDLRKYLGNKLLDESFSFTKIHE-SL 388

Query: 662 EVIRFDAEIENYSMLK 709
           E   F +E E Y MLK
Sbjct: 389 ETSNFTSECETYKMLK 404


>Z82069-4|CAB04905.1|  290|Caenorhabditis elegans Hypothetical
           protein W04A8.5 protein.
          Length = 290

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 8/56 (14%)
 Frame = +2

Query: 572 TISNWELMEKLRKM-IQPESFS------LLKVSKHSSEVIRFDA-EIENYSMLKMV 715
           T+SNW + EK+RK   Q  +FS      LLK  K ++  ++F A +IEN   L +V
Sbjct: 176 TVSNWNVFEKVRKYNFQGINFSSHQANMLLKSLKSNNNFVQFRANDIENSLDLSVV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,154,777
Number of Sequences: 27780
Number of extensions: 297736
Number of successful extensions: 612
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)